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Comment: Comment: Why are the basics so complicated? Basic coverage filtering for VCF files
5 weeks ago by DBScan ▴ 300
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848
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Comment: Comment: t-test in two groups, multiple rows
9 weeks ago by DBScan ▴ 300
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841
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Answer: Answer: gnomAD4.0 Hail Table Downloading
9 weeks ago by DBScan ▴ 300
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442
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Comment: Comment: HLA genotyping of whole genome sequencing data
11 weeks ago by DBScan ▴ 300
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1.1k
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Answer: Answer: Nextflow and self-made pipelines opinion
11 weeks ago by DBScan ▴ 300
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379
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Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
11 weeks ago by DBScan ▴ 300
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379
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Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
11 weeks ago by DBScan ▴ 300
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923
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Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
12 weeks ago by DBScan ▴ 300
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923
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Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
12 weeks ago by DBScan ▴ 300
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479
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Answer: Answer: how to extract variants from the vcf.gz files linked below?
12 weeks ago by DBScan ▴ 300
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272
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Comment: Comment: Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
3 months ago by DBScan ▴ 300
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504
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
3 months ago by DBScan ▴ 300
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504
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
3 months ago by DBScan ▴ 300
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504
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
3 months ago by DBScan ▴ 300
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721
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Comment: Comment: difference betwween hail and plink
3 months ago by DBScan ▴ 300
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443
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Answer: Answer: What is the best GWAS tool to use for a very large cohort data (UK Biobank data)
3 months ago by DBScan ▴ 300
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620
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Comment: Comment: PCA plot interpretation (single population)
3 months ago by DBScan ▴ 300
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636
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Answer: Answer: fill-from-fasta doesnt fill missing values in REF
3 months ago by DBScan ▴ 300
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527
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Comment: Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
3 months ago by DBScan ▴ 300
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1
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583
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Answer: Answer: Suggestions for a simpler solution for collecting snakemake rule output in a tex
3 months ago by DBScan ▴ 300
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740
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Comment: Comment: Problem with DRAGEN RNAseq hashtable directory
3 months ago by DBScan ▴ 300
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2
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740
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Answer: Answer: Problem with DRAGEN RNAseq hashtable directory
3 months ago by DBScan ▴ 300
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375
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Answer: Answer: how to merge two files without duplicating same column
4 months ago by DBScan ▴ 300
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1
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756
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Comment: Comment: GIAB Benchmarking
4 months ago by DBScan ▴ 300
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1
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666
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Comment: Comment: Calculating number of SNPs in linkage disequilibrium at different thresholds fro
4 months ago by DBScan ▴ 300
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468
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Comment: Comment: GATK version check failed
4 months ago by DBScan ▴ 300
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984
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Comment: Comment: Problem in installing 'magick' R package
5 months ago by DBScan ▴ 300
2
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1
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890
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Answer: Answer: Snakemake alignment script
7 months ago by DBScan ▴ 300
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631
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Comment: Comment: Saving the output of LD pruning from SNPRelate package as a new GDS file
7 months ago by DBScan ▴ 300
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518
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Answer: Answer: VCF QUAL field for multiple samples
8 months ago by DBScan ▴ 300
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2
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1.2k
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Comment: Comment: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
9 months ago by DBScan ▴ 300
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1.2k
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Comment: Comment: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
9 months ago by DBScan ▴ 300
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1
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727
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Answer: Answer: BWA-mem2 vs Bowtie2: no deterministic option
9 months ago by DBScan ▴ 300
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1
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1.2k
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Answer: Answer: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
9 months ago by DBScan ▴ 300
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780
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Answer: Answer: vcf file
9 months ago by DBScan ▴ 300
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1.7k
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Answer: Answer: The result of Illumina/hap.py using the same file.
9 months ago by DBScan ▴ 300
1
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1
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1.3k
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Answer: Answer: How to liftover SNP positions from one genome to another genome?
9 months ago by DBScan ▴ 300
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1
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773
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Comment: Comment: bcftools view to failed reader data
9 months ago by DBScan ▴ 300
2
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1
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773
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Answer: Answer: bcftools view to failed reader data
9 months ago by DBScan ▴ 300
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1
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3.2k
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Comment: Comment: Conda/Mamba environment activation error
9 months ago by DBScan ▴ 300
2
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1
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3.2k
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Answer: Answer: Conda/Mamba environment activation error
9 months ago by DBScan ▴ 300
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0
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1.2k
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Answer: Answer: Rstudio server in Snakemake
10 months ago by DBScan ▴ 300
1
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0
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1.1k
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Comment: Comment: Qualimap multi-bamqc input file
10 months ago by DBScan ▴ 300
1
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1
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1.1k
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Comment: Comment: Qualimap multi-bamqc input file
10 months ago by DBScan ▴ 300
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1
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709
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Comment: Comment: whole genome sequencing and assembly
10 months ago by DBScan ▴ 300
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1
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709
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Comment: Comment: whole genome sequencing and assembly
10 months ago by DBScan ▴ 300
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1
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737
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Comment: Comment: Deepvariant and input CRAM files
10 months ago by DBScan ▴ 300
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0
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507
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Answer: Answer: BWA MEM -K option
10 months ago by DBScan ▴ 300
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1
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714
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Answer: Answer: strelka variant calling
10 months ago by DBScan ▴ 300
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1
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793
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Comment: Comment: Launched: Genozip 15 with co-compression of BAM and FASTQ
10 months ago by DBScan ▴ 300
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