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524
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Comment: Comment: Deeptools scale issue for plotHeatmap
7 weeks ago by Devon Ryan 104k
0
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1
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524
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Comment: Comment: Deeptools scale issue for plotHeatmap
7 weeks ago by Devon Ryan 104k
0
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1
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524
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Comment: Comment: Deeptools scale issue for plotHeatmap
7 weeks ago by Devon Ryan 104k
1
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0
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756
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Answer: Answer: --normalizeUsing RPGC
3 months ago by Devon Ryan 104k
1
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1
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521
views
Comment: Comment: Wrong in Deeptools : the enrichment of TSS and TES region are similar when using
6 months ago by Devon Ryan 104k
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0
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611
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Comment: Comment: How to get ncol = nrow?
7 months ago by Devon Ryan 104k
2
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1
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1.4k
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Comment: Comment: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
8 months ago by Devon Ryan 104k
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0
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539
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Comment: Comment: DESeq2 : parameter of Negative Binomial model in a context of gene expression
11 months ago by Devon Ryan 104k
3
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1
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994
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Answer: Answer: No differentially expressed genes after multiple testing correction in mice
12 months ago by Devon Ryan 104k
5
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0
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2.0k
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Answer: Answer: Bioinformatics opportunities in Europe?
13 months ago by Devon Ryan 104k
0
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0
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876
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Comment: Comment: How Wald test calculates p-values in DESeq2?
19 months ago by Devon Ryan 104k
1
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1
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13k
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Comment: Comment: Convert fastq.gz to fastq.bgz
19 months ago by Devon Ryan 104k
1
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0
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606
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Comment: Comment: Why the number of genes decreased after dds (DESeqDataSetFromMatrix)?
19 months ago by Devon Ryan 104k
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0
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1.9k
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Comment: Comment: Come work with me! Bioinformatician - Boston MA
20 months ago by Devon Ryan 104k
1
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1
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1.9k
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Comment: Comment: Come work with me! Bioinformatician - Boston MA
20 months ago by Devon Ryan 104k
7
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6
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1.9k
views
Job: Come work with me! Bioinformatician - Boston MA
bioinformatician
updated 10 months ago by 43k • written 20 months ago by 104k
2
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1
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640
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Answer: Answer: Do edger, limma and deseq2 can be used with datasets from UMIs
23 months ago by Devon Ryan 104k
1
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1
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691
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Comment: Comment: Calculate the ratio of H3K4me3 to H3K4me1 using output of deeptools computeMatri
2.1 years ago by Devon Ryan 104k
1
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0
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851
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Answer: Answer: Interpreting output produced by computeMatrix reference-point
2.1 years ago by Devon Ryan 104k
1
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1
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1.8k
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Comment: Comment: Pool or not to pool
2.1 years ago by Devon Ryan 104k
2
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1
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1.8k
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Comment: Comment: Pool or not to pool
2.1 years ago by Devon Ryan 104k
1
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1
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1.8k
views
Comment: Comment: Pool or not to pool
2.1 years ago by Devon Ryan 104k
1
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1
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1.4k
views
Comment: Comment: BAM > featurecount > DEseq2 Nextflow/Snakemake pipeline
2.1 years ago by Devon Ryan 104k
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0
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3.4k
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Comment: Comment: Why piping a conda command into bash doesn't work ?
2.1 years ago by Devon Ryan 104k
1
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2
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3.4k
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Comment: Comment: Why piping a conda command into bash doesn't work ?
2.1 years ago by Devon Ryan 104k
1
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0
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2.4k
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Comment: Comment: Extracting Methylation Data
2.2 years ago by Devon Ryan 104k
1
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0
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2.5k
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Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
2.3 years ago by Devon Ryan 104k
1
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0
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954
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Comment: Comment: bisulfite methylation alignment rate
2.3 years ago by Devon Ryan 104k
0
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0
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10k
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Comment: Comment: DESeq2 modelling and Wald's test
2.3 years ago by Devon Ryan 104k
1
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1
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2.5k
views
Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
2.3 years ago by Devon Ryan 104k
2
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1
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2.8k
views
Comment: Comment: normalization for unsupervised analysis by DESeq2
2.3 years ago by Devon Ryan 104k
0
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1
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954
views
Comment: Comment: bisulfite methylation alignment rate
2.3 years ago by Devon Ryan 104k
0
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0
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4.1k
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Comment: Comment: HIsat2 bam and summary output - multiple output file type
2.3 years ago by Devon Ryan 104k
2
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0
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2.8k
views
Comment: Comment: normalization for unsupervised analysis by DESeq2
2.3 years ago by Devon Ryan 104k
0
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0
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9.0k
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Comment: Comment: featureCounts isoform vs gene summarization
2.3 years ago by Devon Ryan 104k
2
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0
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839
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Answer: Answer: deeptools plotprofile TSS and TES are very close
2.3 years ago by Devon Ryan 104k
1
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0
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1.9k
views
Comment: Comment: delete a file
2.3 years ago by Devon Ryan 104k
2
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0
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836
views
Answer: Answer: multiBamSummary for unpaired end read?
2.4 years ago by Devon Ryan 104k
0
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1
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1.4k
views
Answer: Answer: Log2 Scale Deeptools
2.4 years ago by Devon Ryan 104k
0
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0
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1.4k
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Comment: Comment: Log2 Scale Deeptools
2.4 years ago by Devon Ryan 104k
3
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1
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1.6k
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Answer: Answer: Errors when ajusting pvalue on R
2.4 years ago by Devon Ryan 104k
2
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0
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1.6k
views
Answer: Answer: Normalizing BAM Files
2.5 years ago by Devon Ryan 104k
1
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0
replies
1.8k
views
Answer: Answer: deeptools reference-point center
2.5 years ago by Devon Ryan 104k
1
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1
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1.7k
views
Comment: Comment: ? in cram files
2.5 years ago by Devon Ryan 104k
2
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1
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1.7k
views
Answer: Answer: ? in cram files
2.5 years ago by Devon Ryan 104k
1
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0
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1.9k
views
Comment: Comment: Singularity container for deepTools?
2.6 years ago by Devon Ryan 104k
0
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0
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1.9k
views
Comment: Comment: Kmergenie module readfq not found
2.6 years ago by Devon Ryan 104k
0
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0
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1.6k
views
Comment: Comment: DESeq2 Not full Rank - Age & Medication
2.7 years ago by Devon Ryan 104k
2
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1
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1.6k
views
Comment: Comment: DESeq2 Not full Rank - Age & Medication
2.7 years ago by Devon Ryan 104k
1
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0
replies
1.3k
views
Comment: Comment: Bedfile format deeptools
2.7 years ago by Devon Ryan 104k
10,041 results • Page 1 of 201
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