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116,962 results • Page
3 of 2340
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Votes
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0
votes
0
replies
105
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
eigencorplot
PCAtools
deseq2
pca
3 days ago by
BioinfGuru
★ 1.7k
2
votes
8
replies
355
views
joint callset and vcf sorting, unknown TAG issue
sort
bcftools
GLNexus
merge
VCF
updated 3 days ago by
Pierre Lindenbaum
161k • written 3 days ago by
Matteo Ungaro
▴ 100
0
votes
0
replies
123
views
News:
Online course: An Introduction to Nanopore Direct RNA Sequencing
Nanopore
RNAseq
3 days ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
226
views
input file in rmats
rmats
updated 3 days ago by
Mathew
▴ 140 • written 5 days ago by
Lambodarswain316
• 0
3
votes
3
replies
344
views
Kraken2 database
kraken
microbialdb
database
krakendb
kraken2
updated 2 days ago by
Mathew
▴ 140 • written 4 days ago by
Christopher
• 0
6
votes
7
replies
369
views
Longest transcript variant per gene
transcript
longest
variant
orthofinder
3 days ago by
sansan_96
▴ 90
2
votes
3
replies
265
views
error in fun(x((i)), ...) : only defined on a data frame with all numeric alike variables
studio
Cibersort
R
2 days ago by
Azra
▴ 10
2
votes
1
reply
230
views
Failed to open VCF file
GATK
sentieon
BWA-MEM
updated 4 days ago by
Pierre Lindenbaum
161k • written 4 days ago by
melissachua90
▴ 70
9
votes
7
replies
7.2k
views
Align paired and unpaired reads simultaneously using Bowtie2?
alignment
updated 4 days ago by
Ruqaiya
• 0 • written 5.7 years ago by
xiaozhongzhiping
▴ 20
0
votes
4
replies
384
views
Adata.raw.X in LIANA, something wrong with conversion from Seurat to adata in python.
k
2 days ago by
beginner123
• 0
6
votes
4
replies
13k
views
Trimmomatic: What is the difference between paired and unpaired output files in paired-end mode
trimmomatic
paired-end
updated 4 days ago by
Ruqaiya
• 0 • written 6.4 years ago by
dllopezr
▴ 130
0
votes
2
replies
224
views
java.nio.bufferunderflowexception haplotypecaller error for bqsr reads
deducplicated
java.nio.bufferunderflowexception
haplotypecaller
bqsr
2 days ago by
analyst
▴ 50
0
votes
6
replies
404
views
Is it Possible to "Merge" data from Replicates within a VCF SNP File
snp
vcf
genomics
plink
updated 2 days ago by
Ram
43k • written 5 days ago by
ajbarrett98
• 0
0
votes
11
replies
522
views
In IGV is this a heterogeneous mutation or false call?
mutations
IGV
heterogeneous
3 days ago by
Tuck898
• 0
3
votes
3
replies
270
views
what is another word for a BLAST "hit"?
blast
alignment
5 days ago by
dec986
▴ 380
0
votes
1
reply
199
views
extract viral protein of interest from 10k whole viral genomes
nBLAST
viral-genome
updated 5 days ago by
Ram
43k • written 5 days ago by
Shwetha
• 0
0
votes
0
replies
161
views
Marker Features variance by cluster, sample, and treatment group
Seurat
scATAC-seq
ArchR
updated 5 days ago by
Ram
43k • written 5 days ago by
naomiboldon
• 0
1
vote
3
replies
278
views
How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
gatk
vcf
liftover
updated 5 days ago by
Ram
43k • written 5 days ago by
Omics data mining
▴ 260
9
votes
6
replies
12k
views
samtools tview symbols
samtools
updated 8.8 years ago by
Ashutosh Pandey
12k • written 8.8 years ago by
biolab
★ 1.4k
2
votes
9
replies
679
views
Filtering Multi-sample VCF file for all except one Genotype
variant
SNP
VCF
updated 15 hours ago by
Pierre Lindenbaum
161k • written 8 days ago by
schmince
• 0
0
votes
5
replies
311
views
Too many unpaired forward reads found by Trimmomatic
Trimmomatic
2 days ago by
SilhouetteQ
• 0
0
votes
1
reply
184
views
Alignment of samples with spike-in
alignment
multimapping
RNA-seq
ChIP-seq
spike-in
updated 5 days ago by
GenoMax
142k • written 5 days ago by
maria.soler
• 0
0
votes
2
replies
283
views
How are score_weights calculated in this code?
single-cell
4 days ago by
carolofharvest
▴ 40
0
votes
1
reply
218
views
How to convert Haps file to vcf file?
pre-phasing
GWAS
imputation
updated 5 days ago by
curious
▴ 750 • written 5 days ago by
SeoGyun
• 0
0
votes
0
replies
154
views
Trouble converting tfam and tped to map and ped files
plink
ped
tfam
tped
map
5 days ago by
Samantha
• 0
0
votes
1
reply
189
views
Microbial Signal Transduction Database
MiST
updated 5 days ago by
zx8754
11k • written 5 days ago by
Shravani
• 0
0
votes
1
reply
204
views
DESeq2 error
DESeq2
updated 5 days ago by
ATpoint
82k • written 5 days ago by
sooni
▴ 20
0
votes
0
replies
142
views
Allele specific expression of imprinted gens from 10x scRNA-seq data
scrna-seq
imprinted
10x
genes
5 days ago by
singcell
• 0
0
votes
1
reply
213
views
When should I use R-MarkDown over R-Script ?
r
rscript
rmarkdown
updated 5 days ago by
ATpoint
82k • written 5 days ago by
Amr
▴ 160
0
votes
2
replies
224
views
LncRNA Nomenclature
ENST
nomenclature
lncrna
GBB
ENSG
5 days ago by
jain72744
▴ 10
6
votes
2
replies
234
views
EdgeR - relationship between logFC and coefficients
differential-expression
r
edger
updated 5 days ago by
Gordon Smyth
★ 7.2k • written 5 days ago by
gBioStar5
▴ 10
2
votes
5
replies
398
views
Importing a fastq file
Fastq
updated 5 days ago by
size_t
▴ 120 • written 6 days ago by
oumo
• 0
3
votes
1
reply
204
views
Question about methylation location
Methylation
WGBS
bisulfide
updated 5 days ago by
dthorbur
★ 2.0k • written 6 days ago by
Eren
• 0
0
votes
0
replies
152
views
Krona Pie-chart taxanomy IDs were not found warning. Taxonomy Classification Metagenomics
Classification
Metagenomics
Krona
Kraken2
6 days ago by
Aytaç
• 0
0
votes
0
replies
167
views
How do I calculate SE or P value if I only have BETA
prscsx
beta
se
pvalue
updated 5 days ago by
zx8754
11k • written 6 days ago by
curious_butterfly
• 0
0
votes
0
replies
157
views
supervised admixture
supervised
admixture
6 days ago by
RT
▴ 10
2
votes
0
replies
153
views
News:
course on Landscape Genomics at the EPFL in Lausanne (June 17-21)
LandscapeGenomics
SNPs
LocalAdaptation
GIS
6 days ago by
carlopecoraro2
★ 2.5k
0
votes
8
replies
441
views
Different output for read length
samtools
BAM
6 days ago by
marco.barr
▴ 120
0
votes
1
reply
362
views
Snakemake fails to find conda in PBS
snakemake
updated 6 days ago by
tim.booth
▴ 60 • written 4 weeks ago by
yixinzeng
• 0
0
votes
2
replies
224
views
Presence of unknown sites in ANNOVAR output file
ANNOVAR
updated 5 days ago by
Ram
43k • written 6 days ago by
sainavyav22
• 0
3
votes
4
replies
313
views
Truncated metadata file report from ENA Portal API
ena
python
5 days ago by
Giulia
• 0
0
votes
0
replies
187
views
What is workflow for de-novo assembling of nuclear and mito genomes of non-model organisms
de-novo
WGS
DNA-seq
assembling
6 days ago by
Matvii Mykhailichenko
• 0
0
votes
3
replies
557
views
JASPAR2024_getMatrixSet error
JASPAR2024
getMatrixSet
updated 6 days ago by
Ram
43k • written 12 weeks ago by
maplewj
▴ 10
0
votes
5
replies
326
views
How to convert normalized BigWig file to count matrix?
count-matrix
BigWig
2 days ago by
feather-W
• 0
0
votes
3
replies
294
views
bcftools - reducing to "sites-only"?
sites-only
bcftools
updated 6 days ago by
Pierre Lindenbaum
161k • written 7 days ago by
Matthew
• 0
3
votes
4
replies
3.0k
views
Have you ever obtained user guide of ExomeCNV?
CNV
updated 4.4 years ago by
lffu_0032
▴ 90 • written 5.2 years ago by
oghzzang
▴ 50
0
votes
1
reply
151
views
input file for alternative splicing in rmats in linux
rmats
updated 6 days ago by
Ram
43k • written 6 days ago by
Lambodarswain316
• 0
2
votes
2
replies
241
views
Server or aws cloud- which one is better for gatk pipeline
aws
server
calling
gatk
cloud
updated 6 days ago by
Michael
54k • written 6 days ago by
ashaneev07
▴ 20
1
vote
1
reply
448
views
ComBat_Seq stuck adjusting the data
Batch-Effect
RNAseq
ComBat-Seq
updated 6 days ago by
Jaïr
• 0 • written 4 months ago by
NorbertK
▴ 10
4
votes
3
replies
2.9k
views
How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when run SamToFastq
samtofasq
picard
validatesamfile
updated 6 days ago by
Pierre Lindenbaum
161k • written 6 days ago by
Lila M
★ 1.2k
116,962 results • Page
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Comment: bbmerge (bbmap) ~ error with insert size file output
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Hi Genomax, This is the thread: https://www.biostars.org/p/9582467/ Cheers, Chris
Comment: Inquiry about deseq2 transformation
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that's helpful, thanks :)
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