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1,000 results • Page 1 of 20
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6
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4
replies
418
views
Forum: Ideal PC configurations and operating system for bioinformatics laboratory
PC
12 days ago by Estevão ▴ 10
0
votes
0
replies
189
views
Forum: Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
annotation scRNA llm
21 days ago by yxwucq • 0
5
votes
2
replies
355
views
Forum: Bioinformatics: Where do I start
Sequencing
updated 28 days ago by 43k • written 28 days ago by ▴ 20
7
votes
7
replies
1.8k
views
Forum: Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career advice
updated 29 days ago by ★ 2.5k • written 29 days ago by • 0
1
vote
2
replies
397
views
Forum: VCF bulk handling
bcftools SnpEff WGS VEP VCF
27 days ago by Javier • 0
16
votes
10
replies
1.1k
views
6 follow
Forum: F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 6 weeks ago by 5.3k • written 6 weeks ago by ★ 2.4k
1
vote
1
reply
242
views
Forum: Can I use this community for software development?
software-development
updated 7 weeks ago by 43k • written 7 weeks ago by • 0
5
votes
2
replies
403
views
Forum: Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 7 weeks ago by 54k • written 7 weeks ago by • 0
0
votes
0
replies
191
views
Forum: Field of Study in Computational Biology
Genomics Computational-Biology PhD
updated 8 weeks ago by 43k • written 8 weeks ago by • 0
1
vote
3
replies
507
views
Forum: Development plan for a bioinformatics database developer/coder
developer
8 weeks ago by pixie@bioinfo ★ 1.5k
7
votes
8
replies
760
views
Forum: Bioinformatics career transition
career forum
updated 8 weeks ago by ★ 16k • written 8 weeks ago by ▴ 20
4
votes
2
replies
524
views
Forum: Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein CAFA5
9 weeks ago by Anatoly A. ▴ 10
6
votes
6
replies
806
views
Forum: You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical thought-experiment
9 weeks ago by jared.andrews07 ★ 16k
0
votes
0
replies
190
views
Forum: What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc tcga genomics-data-commons
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 1.2k
0
votes
2
replies
422
views
Forum: What's the state of the art in bacterial whole genome alignment?
whole genome alignment mauve
10 weeks ago by Dave Carlson ★ 1.7k
33
votes
12
replies
1.1k
views
7 follow
Forum: Nextflow and self-made pipelines opinion
nextflow pipeline data-analysis
10 weeks ago by karlaarz ▴ 110
5
votes
4
replies
598
views
Forum: Would reaching out to local labs and startups help with my career transition?
career volunteering
updated 11 weeks ago by 142k • written 11 weeks ago by ▴ 10
1
vote
2
replies
400
views
Forum: Exploring Career Reentry: Challenges and opportunities for Women After Maternity and Childcare Breaks
Maternity Career-Gap career-reentry
updated 11 weeks ago by 82k • written 11 weeks ago by ▴ 20
8
votes
7
replies
854
views
6 follow
Forum: Tower Server configuration for NGS data analysis
NGS
updated 12 weeks ago by ▴ 120 • written 3 months ago by • 0
1
vote
0
replies
300
views
Forum: list of bioinformatics tools in cancer genomics
mutations CNA cancer genomics LOH
updated 12 weeks ago by 161k • written 12 weeks ago by ★ 1.4k
4
votes
2
replies
402
views
Forum: bulk seq vs. sc-seq
scATAC-seq ATAC-seq scRNAseq RNAseq
updated 3 months ago by ★ 6.0k • written 3 months ago by ▴ 10
8
votes
6
replies
2.9k
views
Forum: Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by 10k
0
votes
0
replies
215
views
Forum: tutorial for carrier screening analyses?
carrier-screening
updated 3 months ago by 43k • written 3 months ago by ▴ 20
2
votes
3
replies
455
views
Forum: My Project
Project CLI MD-Simulations Molecular-docking
3 months ago by Ajay A Shettigar • 0
17
votes
11
replies
1.0k
views
Forum: How to overcome the imposter syndrome in bioinformatics?
advice
3 months ago by sil_bioinfo ▴ 40
10
votes
7
replies
2.3k
views
Forum: How to learn bioinformatics?
learning
updated 3 months ago by ★ 1.3k • written 24 months ago by ▴ 20
26
votes
27
replies
2.2k
views
10 follow
Forum: Determining computer time required
computer hpc time
updated 3 months ago by ★ 6.0k • written 4 months ago by ▴ 40
7
votes
6
replies
767
views
Forum: where to work as a bioinformatician (NGS/IA)
employment omics ia ngs
updated 4 months ago by 43k • written 4 months ago by ▴ 20
21
votes
12
replies
3.6k
views
Forum: How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta how-to documentation
3 months ago by Ram 43k
2
votes
1
reply
457
views
Forum: Cataloguing available spatial transcriptomics tools, then linking them together into a workflow?
cytassist transcriptomics nanostring xenium visium
4 months ago by LauferVA 4.2k
49
votes
20
replies
2.1k
views
10 follow
Forum: First experiences matter
first-time tolerance
updated 4 months ago by ★ 2.6k • written 4 months ago by ★ 27k
4
votes
3
replies
809
views
Forum: How to get started in bioinformatics
students
updated 4 months ago by 43k • written 4 months ago by ▴ 10
2
votes
2
replies
601
views
Forum: Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat single-cell omics batch rnaseq
updated 4 months ago by 43k • written 4 months ago by ▴ 40
0
votes
2
replies
3.3k
views
Forum: I’m considering a career transition from software engineering to bioinformatics. Is it a good fit for me?
career
updated 4 months ago by 142k • written 4 months ago by ▴ 10
5
votes
3
replies
638
views
Forum: Binning the rare biosphere
metagenomics soil assembly techniques binning
updated 4 months ago by ★ 27k • written 4 months ago by ▴ 20
6
votes
2
replies
685
views
Forum: how to start Bioinformatics?
basics
updated 5 months ago by ★ 27k • written 5 months ago by • 0
19
votes
5
replies
1.2k
views
6 follow
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics snps survey papers
4 months ago by Raony Guimarães ★ 1.4k
4
votes
6
replies
965
views
6 follow
Forum: Bioinformatics: what do you think of it in the next 20 years?
future
updated 5 months ago by 43k • written 5 months ago by • 0
1
vote
1
reply
506
views
Forum: want to work in open source project/project in bioinformatics
project
updated 5 months ago by 43k • written 5 months ago by • 0
3
votes
5
replies
1.0k
views
Forum: Current Trends in Bioinformatics
structural-bioinformatics
updated 5 months ago by 43k • written 6 months ago by • 0
21
votes
11
replies
2.6k
views
6 follow
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
updated 5 months ago by 22k • written 14 months ago by ▴ 150
176
votes
46
replies
19k
views
26 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
5 months ago by Istvan Albert 100k
3
votes
2
replies
643
views
Forum: RNA-Seq data analysis - question
Python RNA-Seq R
updated 6 months ago by ▴ 10 • written 6 months ago by ▴ 40
0
votes
0
replies
388
views
Forum: How to learn bioinformatics online?
self-education education learning
updated 6 months ago by 43k • written 6 months ago by • 0
6
votes
5
replies
2.3k
views
Forum: Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
6 months ago by tshtatland ▴ 190
7
votes
9
replies
1.5k
views
6 follow
Forum: Mentor for a beginner bioinformatics student
project mentor
6 months ago by UT_FAN ▴ 40
0
votes
0
replies
476
views
Forum: Steps after doublet detection in single cell data
scRNA doublet
7 months ago by ishwarvh • 0
0
votes
0
replies
368
views
Forum: Automated Checks And QA
retrospective
7 months ago by Sasha ▴ 840
7
votes
13
replies
1.4k
views
Forum: How do you validate and verify your pipeline's software updates?
Validation Verification Quality-Assurance
updated 6 months ago by 43k • written 7 months ago by ▴ 10
21
votes
7
replies
12k
views
Forum: Bioinformatics short paper journal resource [software/webapps/database]
journal software webapp
updated 7 months ago by ▴ 100 • written 8.1 years ago by 11k
1,000 results • Page 1 of 20
Recent Votes
A: Best de novo assembler for insect genome ?
Comment: sci-RNA-seq
The Biostar Herald for Monday, May 13, 2024
Answer: Finding variants within a subset of a BAM file
Answer: Extracting only 4-fold degenerate sites from gene sequences/alignments?
Answer: Extracting only 4-fold degenerate sites from gene sequences/alignments?
Answer: Help with IGV abbreviation
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Popular Question to nitinra ▴ 50
Scholar to Pierre Lindenbaum 161k
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Recent Replies
Answer: RNAseq RNA content by noodle ▴ 580
There are many tools for this. I recommend [gatk (picard) CollectRnaSeqMetrics][1] or alternatively [RSeQC][2] and then run [multiqc][3…
Comment: Where to get the following bed file? by wyuan37 • 0
Hi, I emailed them and did get the bed file! Thank you so much.
Comment: Where to get the following bed file? by wyuan37 • 0
Thanks! Super helpful.
Answer: Post-imputation QC for input into GWAS analyses by LauferVA 4.2k
1. Imputation algorithms will output log files indicating, among other things, accuracy of imputation. We can't comment on specifics as we …
Comment: Using Cutadapt to trim adapters from paired-end small RNA sequence data by GenoMax 142k
You can simply ignore read 2. It is not adding any information since your small RNA's are going to be small and were completely sequenced b…
Comment: Overlapping Ranges within Granges object by ntsopoul ▴ 60
does this work with a single .bed file?
Comment: Finding variants within a subset of a BAM file by ramiro.barrantes • 0
Actually, I found a solution in downloading "bam slices" from TCGA ([https://docs.gdc.cancer.gov/API/Users_Guide/BAM_Slicing/][1]) , which …
Comment: Overlapping Ranges within Granges object by ntsopoul ▴ 60
![enter image description here][1]Here is some representative data and an image in igv of one gene. I have loaded the .bed file in igv. As …
Answer: RNAseq RNA content by ntsopoul ▴ 60
I guess he/she means raw RNA. Roughly 2% of all RNA is mRNA the rest is rRNA. I think the first thing you need to figure out is with which …
Comment: RNAseq RNA content by ATpoint 82k
What is "row RNA"?
Comment: Overlapping Ranges within Granges object by ATpoint 82k
I would probably collapse overlapping regions with `reduce` to create the second GRanges. Can you add some representative data? Using dput?
Comment: Overlapping Ranges within Granges object by ntsopoul ▴ 60
I have one Granges object and not two. Every IRanges entry is the critical region of the gRNA. Can this still work?
Answer: Extracting only 4-fold degenerate sites from gene sequences/alignments? by J. ▴ 40
FYI if you also have this problem, this seems to be a pretty good solution: https://github.com/harvardinformatics/degenotate
Comment: Biomart issue, why so few 3'utrs? by GenoMax 142k
AFAIK "MANE" project is only for human protein-coding genes. One potential explanation. Out of the 2000 ID's only 125 may be MANE. https:…
Answer: Biomart issue, why so few 3'utrs? by i.sudbery 19k
The MANE-select transcripts are pairs of identically annotated transcripts in ReqSeq and Ensembl. The 3' UTR is the region where otherwise …
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