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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 3 months ago by 2.7k • written 7.4 years ago by 100k
0
votes
2
replies
380
views
News: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq variant-calling RNA-seq illumina transcriptomics
16 hours ago by David Langenberger 11k
0
votes
0
replies
117
views
News: Online course: An Introduction to Nanopore Direct RNA Sequencing
Nanopore RNAseq
2 days ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
148
views
News: course on Landscape Genomics at the EPFL in Lausanne (June 17-21)
LandscapeGenomics SNPs LocalAdaptation GIS
4 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
118
views
News: Online course: Introduction to Deep Learning
Python Deep-Learning Convolutional-Neural-Network Machine-Learning
updated 5 days ago by 43k • written 5 days ago by ★ 2.5k
0
votes
0
replies
114
views
News: Online course. -Time series analysis and Forecasting in R
Time-Series Forecasting R Stastics
6 days ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
265
views
News: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering Spatial-transcriptomics
updated 7 days ago by • 0 • written 8 days ago by ▴ 10
0
votes
0
replies
117
views
News: Online course: Bioinformatic analysis of transposable elements
GenomeAssembly Transcriptomics TransposableElements ManualCuration
9 days ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
1.2k
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
9 days ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
144
views
News: Cellosaurus release 49 is available
cell biocuration line database news knowledgebase
11 days ago by Amos Bairoch ▴ 120
0
votes
0
replies
112
views
News: Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding Programming R
updated 11 days ago by 43k • written 12 days ago by ★ 2.5k
0
votes
0
replies
178
views
News: Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy Python NumPy
updated 13 days ago by 43k • written 13 days ago by • 0
0
votes
0
replies
139
views
News: Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis Statistics R
updated 14 days ago by 43k • written 14 days ago by ★ 2.5k
0
votes
0
replies
131
views
News: Online course: Genome Annotation
Genome-Assembly Genome-Annotation
15 days ago by carlopecoraro2 ★ 2.5k
3
votes
0
replies
234
views
News: Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy Generative-AI scRNA Machine-Learning
updated 17 days ago by 43k • written 18 days ago by ▴ 60
0
votes
0
replies
183
views
News: Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis Statistics R
updated 18 days ago by 43k • written 18 days ago by ★ 2.5k
0
votes
0
replies
143
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 19 days ago by 43k • written 20 days ago by ★ 2.5k
3
votes
0
replies
150
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 20 days ago by 43k • written 20 days ago by ★ 2.5k
0
votes
0
replies
114
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
22 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
159
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 22 days ago by 43k • written 23 days ago by ★ 2.5k
0
votes
0
replies
220
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 25 days ago by 43k • written 26 days ago by ★ 2.5k
0
votes
0
replies
202
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 25 days ago by 43k • written 26 days ago by ★ 2.5k
0
votes
0
replies
201
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 27 days ago by 43k • written 27 days ago by 11k
0
votes
0
replies
167
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 28 days ago by 43k • written 28 days ago by ▴ 380
0
votes
0
replies
199
views
News: Online course: Network Analysis in R
NetworkAnalyis R
4 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
207
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 4 weeks ago by 43k • written 4 weeks ago by ★ 2.5k
1
vote
0
replies
148
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 4 weeks ago by 43k • written 4 weeks ago by ▴ 70
2
votes
0
replies
145
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 4 weeks ago by 43k • written 4 weeks ago by ▴ 70
2
votes
0
replies
145
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 4 weeks ago by 43k • written 4 weeks ago by ▴ 70
2
votes
0
replies
135
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
4 weeks ago by Transmitting Science communication ▴ 70
12
votes
2
replies
500
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
4 weeks ago by David Langenberger 11k
2
votes
0
replies
142
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 4 weeks ago by 43k • written 4 weeks ago by ★ 2.5k
0
votes
0
replies
139
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
1
vote
0
replies
197
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
12 days ago by carlopecoraro2 ★ 2.5k
8
votes
2
replies
835
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
5 weeks ago by David Langenberger 11k
0
votes
0
replies
169
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
167
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
6 weeks ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
637
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
6 weeks ago by Johannes W. Dietrich • 0
0
votes
0
replies
226
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 2.5k
0
votes
0
replies
189
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 2.5k
0
votes
0
replies
190
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
179
views
News: Online course: Adaptation Genomics
StructuralVariants Selection AdaptationGenomics PopulationStructure
8 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
171
views
News: Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics Pangenomics
8 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
251
views
News: Online course on Genome Assembly and Annotation (1 seat left)
Galaxy GenomeAssembly GenomeAnnotation
8 weeks ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
192
views
News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
8 weeks ago by PeterC_NCBI ▴ 410
1
vote
1
reply
291
views
News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 8 weeks ago by • 0 • written 3 months ago by ▴ 10
1
vote
0
replies
221
views
News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
9 weeks ago by David Langenberger 11k
0
votes
0
replies
173
views
News: Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly Galaxy Genome-Annotation
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
0
votes
0
replies
180
views
News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
9 weeks ago by sina.majidian ▴ 20
1
vote
0
replies
176
views
News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
10 weeks ago by David Langenberger 11k
1,000 results • Page 1 of 20
Recent Votes
Comment: Help with IGV abbreviation
A: How to get read counts on transcript level using featurecounts?
Answer: Vcf file sorting
Answer: How to interpret infinite odds ratio?
Answer: Is there any way to modify this pie chart ?
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
A: How can I convert -log10 (p-value) to p-value?
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Recent Replies
Comment: How to access GWAVA software of data by GenoMax 142k
Please email the author (grsr at ebi.ac.uk) and let them know that the link above is not available.
Comment: CNVKIT - unable to produce scatter and diagram pdfs by Anitha • 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
Comment: CNVkit for somatic copy number detection by Anitha • 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
Comment: CNVkit for somatic copy number detection by Anitha • 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
Answer: Overlapping Ranges within Granges object by ATpoint 82k
There is no one-hit function in GenomicRanges, but you can stick something together using a combination of `findOverlaps` to first find ove…
Comment: Galaxy StringTie error by trkfs • 0
Hi, I did not encounter any " \ - " characters in the fastq input files, and it doesn't seem to be present in any other files either. Thank…
Comment: How to interpret infinite odds ratio? by Lukas • 0
Thanks you for your answer. But according that links interpretation of inf odds ratio is up to hypothesis of the researcher.So my solution …
Comment: How to access GWAVA software of data by nonaddldy ▴ 10
Not found in https://ftp.sanger.ac.uk/resources/software/gwava/ ![][1] [1]: /media/images/f69695ec-e047-44f6-95ce-cd4edf1c
Comment: How to access GWAVA software of data by nonaddldy ▴ 10
https://www.sanger.ac.uk/tool/gwava/
Comment: Is it necessary to do genotype quality filteration after snp calling with GATK by IdaHao0921 • 0
The species I study is not a model species, VQSR can not be applied here. I already used gatk hard-filtering. I mean, after hard-filtering,…
Answer: Overlapping Ranges within Granges object by Alex Reynolds 35k
If you're not tied to Granges, you could use `bedmap --fraction-both 0.1` to require at least 10% overlap between reference and map regions…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred by Vijith ▴ 30
By doing some online search, I tried installing one module `cpan Bio::DB::Fasta` and it is running like a never-ending installation process…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred by Vijith ▴ 30
I have tried installing AGAT. But it failed the tests. …
Comment: BWA alignment by ATpoint 82k
That is not what the logs above tell, but good you solved it.
Answer: Inquiry about deseq2 transformation by ATpoint 82k
The transformations first correct for sequencing depth (and [composition][1]) and then apply the variance stabilization / regularization. N…
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