Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
5
votes
1
reply
225
views
Answer: Answer: EdgeR - relationship between logFC and coefficients
4 days ago by Gordon Smyth ★ 7.2k
1
vote
1
reply
438
views
Comment: Comment: Design matrix Differential expression analysis
8 days ago by Gordon Smyth ★ 7.2k
2
votes
1
reply
438
views
Answer: Answer: Design matrix Differential expression analysis
10 days ago by Gordon Smyth ★ 7.2k
0
votes
1
reply
431
views
Comment: Comment: Limma Analysis Agilent Microarray Data (GPL1708)
15 days ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
1.4k
views
Answer: Answer: Differential Expression using Isoseq-supplemented reference transcriptome
16 days ago by Gordon Smyth ★ 7.2k
1
vote
1
reply
431
views
Answer: Answer: Limma Analysis Agilent Microarray Data (GPL1708)
17 days ago by Gordon Smyth ★ 7.2k
0
votes
1
reply
293
views
Answer: Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
17 days ago by Gordon Smyth ★ 7.2k
4
votes
1
reply
348
views
Answer: Answer: How to use limma to find differentially expressed genes in response to a continu
18 days ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
276
views
Comment: Comment: permutation test in edgeR
22 days ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
452
views
Comment: Comment: Difference when using difference number of pathways score to compare between 3 g
24 days ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
299
views
Answer: Answer: Removing Illumina microarray probes with no expression HumanHT-12v4
24 days ago by Gordon Smyth ★ 7.2k
2
votes
1
reply
422
views
Answer: Answer: differential gene expression analysis when not all samples have an untreated cou
27 days ago by Gordon Smyth ★ 7.2k
1
vote
1
reply
433
views
Comment: Comment: Limma compare between 3 conditions vs 2 conditions
27 days ago by Gordon Smyth ★ 7.2k
2
votes
0
replies
271
views
Answer: Answer: Choosing an FC Threshold
6 weeks ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
1.1k
views
Comment: Comment: Shrink logFC values after edgeR
7 weeks ago by Gordon Smyth ★ 7.2k
0
votes
1
reply
490
views
Comment: Comment: 'Invalid parameter' error to generate a count matrix using featurecounts
7 weeks ago by Gordon Smyth ★ 7.2k
0
votes
1
reply
490
views
Answer: Answer: 'Invalid parameter' error to generate a count matrix using featurecounts
7 weeks ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
467
views
Comment: Comment: Differential express genes in imbalance groups
8 weeks ago by Gordon Smyth ★ 7.2k
3
votes
3
replies
467
views
Answer: Answer: Differential express genes in imbalance groups
8 weeks ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
223
views
Comment: Comment: Computing mid parent value for DE analysis
9 weeks ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
704
views
Answer: Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
10 weeks ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
1.3k
views
Answer: Answer: MA graphs for EdgeR and Voom vary
10 weeks ago by Gordon Smyth ★ 7.2k
2
votes
0
replies
1.1k
views
Comment: Comment: Shrink logFC values after edgeR
10 weeks ago by Gordon Smyth ★ 7.2k
2
votes
0
replies
734
views
Answer: Answer: Seeking Beginner-Friendly Resources for Deepening Understanding of Bioinformatic
10 weeks ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
491
views
Comment: Comment: Does the order of the batch variable matter in Limma design matrix?
10 weeks ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
3.9k
views
Comment: Comment: Can one plot % of variance using the plotMDS function?
10 weeks ago by Gordon Smyth ★ 7.2k
1
vote
1
reply
491
views
Answer: Answer: Does the order of the batch variable matter in Limma design matrix?
8 weeks ago by Gordon Smyth ★ 7.2k
6
votes
1
reply
487
views
Answer: Answer: Bayesian Differential Expression
12 weeks ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
468
views
Comment: Comment: filtering lowly expressed reads
3 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
249
views
Comment: Comment: Design matrix after RUVg correction
3 months ago by Gordon Smyth ★ 7.2k
2
votes
0
replies
2.9k
views
Comment: Comment: Converting LogCPM to raw counts for DESEQ2
3 months ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
935
views
Answer: Answer: EdgeR: upregulated with respect to what group?
3 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
1.3k
views
Answer: Answer: Is there a program to average read counts from technical replicates?
3 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
914
views
Comment: Comment: How do I work out which condition the genes are down-regulated in?
3 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
914
views
Answer: Answer: How do I work out which condition the genes are down-regulated in?
3 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
1.6k
views
Answer: Answer: positive and negative Fold Change glmLRT test
3 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
753
views
Answer: Answer: logFoldChange computed by EdgeR different from naive log2FCcomputed based on rea
3 months ago by Gordon Smyth ★ 7.2k
2
votes
1
reply
1.1k
views
Answer: Answer: Shrink logFC values after edgeR
3 months ago by Gordon Smyth ★ 7.2k
1
vote
1
reply
508
views
Comment: Comment: Differing p-value cutoffs of limma derived DEGs in volcanoplots
3 months ago by Gordon Smyth ★ 7.2k
3
votes
1
reply
508
views
Answer: Answer: Differing p-value cutoffs of limma derived DEGs in volcanoplots
3 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
314
views
Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
285
views
Comment: Comment: Gene expression of microarray data
3 months ago by Gordon Smyth ★ 7.2k
0
votes
1
reply
612
views
Comment: Comment: Differential RNA editing using edgeR
4 months ago by Gordon Smyth ★ 7.2k
2
votes
1
reply
612
views
Answer: Answer: Differential RNA editing using edgeR
4 months ago by Gordon Smyth ★ 7.2k
0
votes
1
reply
545
views
Comment: Comment: how to start DEG analysis after featurecounts
4 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
1.7k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
10 days ago by Gordon Smyth ★ 7.2k
0
votes
1
reply
1.7k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.2k
0
votes
0
replies
1.7k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.2k
0
votes
1
reply
1.7k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.2k
1
vote
0
replies
1.7k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
5 months ago by Gordon Smyth ★ 7.2k
506 results • Page 1 of 11
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6