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432 results • Page
1 of 9
Sort: Rank
Rank
Views
Votes
Replies
0
votes
1
reply
70
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
6 hours ago by
mropri
▴ 150
0
votes
0
replies
54
views
Gene ontology and homologs
geneontology
bioinformatics
gene
updated 5 hours ago by
GenoMax
142k • written 8 hours ago by
beshka194
• 0
0
votes
0
replies
51
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
9 hours ago by
KHURRAM SHAHZAD
• 0
0
votes
0
replies
53
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
11 hours ago by
Christopher
• 0
0
votes
0
replies
64
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
15 hours ago by
DGTool
• 0
0
votes
0
replies
63
views
Seurat V5 integration
Seurat
samples
integration
combine
16 hours ago by
starswillfade
▴ 10
0
votes
0
replies
73
views
Problem with Seurat package in PercentageFeatureSet function
cell
single
20 hours ago by
Yoosef
▴ 60
0
votes
2
replies
197
views
creating batch colum for batch correction
batch-correction
combat
updated 1 day ago by
Ram
43k • written 1 day ago by
Expert
▴ 10
0
votes
1
reply
134
views
Help with DGEList function
DGEList
R
updated 5 hours ago by
marco.barr
▴ 90 • written 1 day ago by
Natali
• 0
0
votes
0
replies
95
views
Homer motif analysis
Homer
1 day ago by
daffodil
▴ 10
0
votes
1
reply
139
views
HCL database download
database
HCL
human
updated 1 day ago by
GenoMax
142k • written 2 days ago by
sooni
▴ 20
0
votes
0
replies
121
views
Quetion regarding WGCNA
WGCNA
Network-construction
updated 1 day ago by
Ram
43k • written 2 days ago by
deepak180001
• 0
0
votes
1
reply
164
views
fastq screen aligner no specified.
BWA
Bowtie2
FastqScreen
updated 1 day ago by
GenoMax
142k • written 2 days ago by
Ximena
• 0
0
votes
1
reply
161
views
filtering before dada2
bbduk
qiime2
dada2
metagenomic
updated 1 day ago by
Ram
43k • written 2 days ago by
Valentina
• 0
0
votes
6
replies
362
views
Differential Expression Analysis using DESeq2 in R
deseq2
R
updated 2 days ago by
swbarnes2
14k • written 2 days ago by
Erina
• 0
1
vote
3
replies
218
views
TaxID mapping file
annotation
blobtools
RNAseq
decontamination
transcriptomes
9 hours ago by
Lada
▴ 30
0
votes
0
replies
118
views
.lgen file has 3+ different alleles
PLINK
lgen
ped
2 days ago by
Emilie
• 0
0
votes
0
replies
116
views
vcf procesing for ML antigen prediction
formats
vcf
fastaq
HLA_imputation
HLA_typing
2 days ago by
Javier
• 0
0
votes
1
reply
208
views
Extracting mutation status from MAF files - TCGA
TCGA
maf
mutation
updated 1 day ago by
Thanujay S
• 0 • written 2 days ago by
yahn
• 0
0
votes
0
replies
112
views
IGV interpretation for ATM gene for chromosome 11 for a deceased partient suspected of having melanoma
genetic
Variant
predisposition
2 days ago by
mikemakaveli1
• 0
2
votes
2
replies
192
views
Raw counts using stringtie
stringtie
RNA-seq
updated 2 days ago by
GenoMax
142k • written 2 days ago by
ahmad.sajad4541
• 0
0
votes
0
replies
111
views
Modify plot R mtDNA indel
plot
mtDNA
R
2 days ago by
marco.barr
▴ 90
0
votes
0
replies
225
views
Re-Import modified clusterProfiler's GSEA result from .csv for graphical output-generation (i.e. cnetplot, heatplot)
enrichplot
graphical_output
GSEA
clusterProfiler
2 days ago by
NorbertK
• 0
0
votes
2
replies
220
views
Downloading older version of a tool
Alignment
tools
1 day ago by
Ruqaiya
• 0
0
votes
0
replies
130
views
Generating illumina interops SAV like plots for multiqc reports on HPC
visualization
illumina
ngs
sequencing
2 days ago by
rustykb
▴ 20
3
votes
5
replies
254
views
Generating mpileup file using samtools
mpileup
samtools
updated 2 days ago by
Joe
21k • written 2 days ago by
Ruqaiya
• 0
2
votes
3
replies
270
views
Help with choosing a model species for Augustus for a de novo assembled genome.
augustus
annotation
assembly
genome
updated 2 days ago by
dthorbur
★ 1.9k • written 2 days ago by
Vijith
▴ 30
0
votes
0
replies
141
views
SIngle cell analysis
Seurat
scRNA-seq
Harmony
DoubletFinder
Merge
2 days ago by
Jeyong
• 0
0
votes
0
replies
128
views
Empty table plot using plotGseaTable()
FGSEA
2 days ago by
Chris
▴ 260
3
votes
8
replies
6.6k
views
7 follow
GATK genomicsDBimport intervals for WGS
gatk
genomicsdbimport
updated 3 days ago by
Sd
• 0 • written 5.1 years ago by
Nicolas Rosewick
11k
0
votes
2
replies
189
views
Base Quality Score Recalibration with different reference genome
SNPs
GATK
BQSR
RNA-seq
3 days ago by
dtnondorf
• 0
0
votes
1
reply
206
views
Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA2 - where to go from here?
nf-core
16S
amplicon
dada2
ampliseq
updated 3 days ago by
Chris Dean
▴ 390 • written 3 days ago by
sovrappensiero
▴ 90
2
votes
7
replies
414
views
How to access TCGA samples that were treated with a specific drug?
TCGA
RNA-seq
updated 19 hours ago by
Zhenyu Zhang
★ 1.2k • written 3 days ago by
Qroid
▴ 40
0
votes
1
reply
147
views
Provean help
variant
Provean
updated 3 days ago by
Mensur Dlakic
★ 27k • written 3 days ago by
Arun Sai Kumar
• 0
0
votes
0
replies
98
views
Use of annotation of integrated Seurat object in single sample
Seurat
3 days ago by
Bine
▴ 60
0
votes
1
reply
222
views
Subsetting and merging back Seurat Object brings different results
Seurat
3 days ago by
Bine
▴ 60
1
vote
1
reply
137
views
Discrepancy in read counts from fastq
downsampling
fastq
updated 3 days ago by
Ram
43k • written 3 days ago by
marco.barr
▴ 90
0
votes
0
replies
96
views
Successfully identified and Masked rpeats using RM. What Next?
sequence
annotation
repeatmasker
illumina
assembly
3 days ago by
Vijith
▴ 30
0
votes
0
replies
96
views
Combining Methylation Microarray data from different platforms
Microarray
DNA
EPIC
450K
Methylation
3 days ago by
James
▴ 10
0
votes
1
reply
585
views
Basic stats in hierfstat
Fst
stats
hierfstat
updated 4 days ago by
mdav
• 0 • written 18 months ago by
Zoe
• 0
1
vote
3
replies
227
views
Odd alignment question/finding
Alignment
updated 2 days ago by
barslmn
★ 2.1k • written 4 days ago by
poordumbsillyidiot
• 0
0
votes
1
reply
205
views
GATK won't produce figures while analyzing covariates to generate 'recal_plots.pdf'
GATK
recalibration
updated 4 days ago by
GenoMax
142k • written 4 days ago by
mgranada3
▴ 30
0
votes
0
replies
96
views
Tassel 5 GBS: GBSSeqToTagDBPlugin producing empty database
GBS
Tassel5
4 days ago by
meck
• 0
0
votes
0
replies
124
views
Looking for the best way to interpret these data
RNA-seq
ontology
GO
updated 4 days ago by
Ram
43k • written 4 days ago by
Oscar
▴ 10
0
votes
1
reply
151
views
Mutect2 for mitochondria variant discovery
mutect2
mitochondria
updated 4 days ago by
Ram
43k • written 4 days ago by
ernestine.kubi
• 0
0
votes
0
replies
106
views
Tools to circularise the ion torrent bacterial genome assembly
iontorrent
bacteria
circularise
4 days ago by
VITALA
• 0
1
vote
2
replies
246
views
POSSUM not working due to incompatible pssm file
fasta
pse-pssm
pssm
POSSUM
3 days ago by
rianna.collins
• 0
0
votes
1
reply
183
views
Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
rna-seq
updated 4 days ago by
i.sudbery
19k • written 5 days ago by
Edmond
• 0
0
votes
0
replies
142
views
What open-source tools can determine the coverage/completion of a pathway based on EC numbers?
metagenomics
metacyc
enzyme
pathway
genomics
5 days ago by
O.rka
▴ 710
0
votes
1
reply
666
views
after selecting specific GO terms to plot, cneplot is not showing any color for genes, GO terms and only showing lines without nodes.
cneplot
updated 4 days ago by
Ram
43k • written 5 days ago by
Dr Huma Naz
• 0
432 results • Page
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Recent Votes
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if I understood correctly, I might need fle `prot.accession2taxid.gz` file? According to the [documentation][1] in column 2 is Accession.ve…
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