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10 results • Page
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58
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Gene ontology and homologs
geneontology
bioinformatics
gene
updated 7 hours ago by
GenoMax
142k • written 10 hours ago by
beshka194
• 0
0
votes
0
replies
54
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
11 hours ago by
KHURRAM SHAHZAD
• 0
0
votes
0
replies
55
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
13 hours ago by
Christopher
• 0
0
votes
0
replies
66
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
17 hours ago by
DGTool
• 0
0
votes
0
replies
65
views
Seurat V5 integration
Seurat
samples
integration
combine
18 hours ago by
starswillfade
▴ 10
0
votes
0
replies
76
views
Problem with Seurat package in PercentageFeatureSet function
cell
single
22 hours ago by
Yoosef
▴ 60
0
votes
1
reply
140
views
Help with DGEList function
DGEList
R
updated 7 hours ago by
marco.barr
▴ 90 • written 1 day ago by
Natali
• 0
1
vote
3
replies
223
views
TaxID mapping file
annotation
blobtools
RNAseq
decontamination
transcriptomes
11 hours ago by
Lada
▴ 30
2
votes
7
replies
417
views
How to access TCGA samples that were treated with a specific drug?
TCGA
RNA-seq
updated 21 hours ago by
Zhenyu Zhang
★ 1.2k • written 3 days ago by
Qroid
▴ 40
1
vote
2
replies
217
views
Downloading full alignments from Pfam
pfam
15 hours ago by
bef1
• 0
10 results • Page
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Recent Votes
Answer: ERROR When Using Ensembl Plants Biomart Wget API
Answer: Should I remove these cells? (scRNA 10x 5')
Answer: STRING-DB API can't find my protein but I can find it when I go to the STRING-DB
Answer: STRING-DB API can't find my protein but I can find it when I go to the STRING-DB
A: Fold change - a final explanation
Answer: sc/snRNASeq using cell ranger parameters
mitochondria in single nuclear RNAseq
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Recent Replies
Comment: ERROR When Using Ensembl Plants Biomart Wget API
by
Dora
▴ 10
Thank you very much, that works perfectly :) ! Maybe someone needs to use a plant dataset as an example (instead of human dataset ) in the …
Comment: Truncated Bam Error
by
guanghao
• 0
I also have this problem, but it doesn't work even I remove the Xms32g. The result bam is still malformed.
Answer: DMRcate ranges liftover hg19 to hg38
by
aaron.stevens
• 0
Hey, I believe they are mapped to hg19 and this is potentially a bigger problem than people realise, I nearly made this mistake and I would…
Comment: STRING-DB API can't find my protein but I can find it when I go to the STRING-DB
by
brandon
• 0
This worked beautifully using 'requests.get()' in python, thank you so much!
Answer: STRING-DB API can't find my protein but I can find it when I go to the STRING-DB
by
Pierre Lindenbaum
161k
first get the main ID in stringdb: $ wget -qO - "https://string-db.org/api/tsv-no-header/get_string_ids?identifiers=RPS4Y1&species=960…
Comment: Help with DGEList function
by
marco.barr
▴ 90
Are you sure you've loaded the library properly? Have you checked if edgeR is ticked in the list of installed packages? Double-check it. If…
Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
by
mropri
▴ 150
Hi, I just wanted to update that IEGscore and PCNAscore were linearly dependent (or linear combinations of each other). I tested this using…
Comment: TaxID mapping file
by
Lada
▴ 30
if I understood correctly, I might need fle `prot.accession2taxid.gz` file? According to the [documentation][1] in column 2 is Accession.ve…
Answer: install package
by
Pine
▴ 10
To follow on Mathew's reply, one way might be to try and see if you can download and install the package tarball locally: 1. Get the packag…
Comment: agilent human all exon sureselct v7 bed file
by
MiladAD
▴ 10
God bless you man.
Answer: install package
by
Mathew
▴ 50
Hi, This is what happens when I run some code to diagnose the issue. First, I wanted to see what version of R was required for the package…
Comment: TaxID mapping file
by
Lada
▴ 30
thank you, I'll look at these files/documents. .
Answer: LD-prune variants while maintaining a list of SNPs
by
Jautis
▴ 540
I was given a solution by a colleague -- it seems a little hacky, but worked really well! > one way to get this to work is to use --clu…
Answer: Association study using SNP data
by
drajangirija
• 0
Hi Matthew, Thank you very much for your inputs. I am working with Neogen genotyping data, which includes GC values less than 0.15.
Comment: Downloading full alignments from Pfam
by
bef1
• 0
I tried contacting Pfam, they replied that indeed there is an issue on their side with the full alignments, which should be repaired in the…
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