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442 results • Page
1 of 9
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
25
views
Enhanced Volcano-Cut off
enhanced
foldchange
volcano
2 hours ago by
odi
▴ 10
0
votes
1
reply
35
views
Help with Biopython for Beginner
Python
FASTA
Biopython
ORF
Beginner
updated 1 hour ago by
Pierre Lindenbaum
161k • written 2 hours ago by
cput
• 0
0
votes
0
replies
40
views
Annotate VCF via VEP for gnomAD annotation considering FILTER column
vep
vcf
gnomad
3 hours ago by
asalimih
▴ 60
0
votes
4
replies
269
views
Filtering Multi-sample VCF file for all except one Genotype
variant
SNP
VCF
4 hours ago by
schmince
• 0
0
votes
1
reply
84
views
featureCounts output summary assigned value higher than uniquely mapped reads from HISAT2
RNA-seq
featureCounts
HISAT
3 hours ago by
Prawesh
• 0
0
votes
9
replies
1.4k
views
kinannote software installation problems
kinannote
updated 5 hours ago by
Emanoelle
• 0 • written 5.7 years ago by
Elizabeth
▴ 30
0
votes
0
replies
39
views
Pathway analysis of Bacteria from denovo genome assembly
KEGG-KASS
WGS
Pathway
denovo
updated 4 hours ago by
Ram
43k • written 7 hours ago by
mathavanbioinfo
▴ 90
3
votes
4
replies
3.9k
views
FarmCPU - how to explain the reported 'effect'?
gwas
updated 12 hours ago by
chloek88
• 0 • written 5.5 years ago by
Philipp Bayer
8.4k
0
votes
3
replies
178
views
RNA seq analysis
DESeq
RNA-seq
updated 5 hours ago by
Ram
43k • written 13 hours ago by
prifa
• 0
0
votes
0
replies
90
views
Chance for trained without experience
bio
updated 13 hours ago by
ATpoint
82k • written 14 hours ago by
shehab
• 0
0
votes
0
replies
66
views
Xenium multi sample data
batch
annotation
cell
Xenium
effect
15 hours ago by
Omics data mining
▴ 260
0
votes
2
replies
122
views
Phasing a mixture of two individuals' DNA with long reads
long-reads
phasing
13 hours ago by
njornet
▴ 20
0
votes
2
replies
140
views
Exploring Diet Effects in Single-Cell RNA Sequencing
batch_effect
scRNA
seurat
integration
updated 8 hours ago by
Adam
▴ 30 • written 16 hours ago by
Darya
• 0
0
votes
5
replies
186
views
Percentage coverage of reference genome by de novo genome
SAMtools
BWA
alignment
ddRAD
updated 13 hours ago by
Joe
21k • written 16 hours ago by
Lemonhope
• 0
0
votes
0
replies
84
views
Why does my Hi-C contact map show large regions making little to no contact?
BWA-MEM2
Hi-C
PretextMap
16 hours ago by
Winter
• 0
0
votes
0
replies
59
views
Generating .bed file and .map file for polyploid vcf file through plink
bed
polyploid
map
plink
19 hours ago by
analyst
▴ 50
0
votes
0
replies
71
views
meffil.snp.concordance
meffil
methylation
snp_concordance
1 day ago by
kyj222637
• 0
0
votes
1
reply
110
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
updated 10 hours ago by
Bastien Hervé
5.3k • written 1 day ago by
sooni
▴ 20
0
votes
3
replies
179
views
STAR aligner error
RNA-seq
STAR
slurm
updated 5 hours ago by
Ram
43k • written 1 day ago by
M.
▴ 30
0
votes
0
replies
76
views
monocle 3-- Could not get node in small cluster
monocle3
1 day ago by
synat.keam
▴ 100
0
votes
2
replies
167
views
Correlating Bulk Differential Expression with quantitative
Differential-Expression
DESeq2
10 hours ago by
Nicholas
• 0
0
votes
1
reply
162
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort.
SAMtools.
BAM.
SAM.
updated 1 day ago by
GenoMax
142k • written 1 day ago by
Sony
▴ 10
5
votes
5
replies
252
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
22 hours ago by
Chris
▴ 280
0
votes
2
replies
165
views
Differentail gene expression results
differential
expression
gene
rna-seq
Deseq2
updated 8 hours ago by
swbarnes2
14k • written 1 day ago by
ahmad.sajad4541
• 0
1
vote
5
replies
196
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
updated 1 day ago by
i.sudbery
19k • written 1 day ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
150
views
student
epitranscriptomics
updated 1 day ago by
ATpoint
82k • written 1 day ago by
useriwa
• 0
0
votes
0
replies
101
views
Imputation of missing genotypes
panel
beagle
imputation
1 day ago by
analyst
▴ 50
0
votes
3
replies
159
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
updated 1 day ago by
GenoMax
142k • written 1 day ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
126
views
Correlation Analysis
statistics
methylation
NGS
expression
updated 14 hours ago by
manaswwm
▴ 510 • written 1 day ago by
Researcher
▴ 30
1
vote
2
replies
165
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
1 day ago by
robert.flynn.21
• 0
0
votes
0
replies
102
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
2 days ago by
Scott McKay
▴ 30
0
votes
0
replies
101
views
Cellphonedb results
cpdb
visulization
cellphonedb
2 days ago by
piotto
▴ 20
0
votes
0
replies
106
views
Cox Model with interaction item interpretation
Cox
2 days ago by
Bine
▴ 60
0
votes
0
replies
93
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
2 days ago by
Javier
• 0
1
vote
7
replies
466
views
Question regarding WGCNA
WGCNA
Network-construction
updated 5 hours ago by
Ram
43k • written 5 days ago by
deepak
• 0
0
votes
0
replies
101
views
vdjtools
vdjtools
2 days ago by
yueli7
▴ 250
0
votes
1
reply
213
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome
16S
DESeq2
updated 1 day ago by
andres.firrincieli
3.6k • written 2 days ago by
Antonio
• 0
0
votes
0
replies
111
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 2 days ago by
Ram
43k • written 2 days ago by
sidrah.maryam
▴ 50
0
votes
0
replies
97
views
Normalizing AMR gene count data
abundance
RGI
updated 2 days ago by
Ram
43k • written 2 days ago by
arshad1292
▴ 100
0
votes
0
replies
112
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 2 days ago by
Pierre Lindenbaum
161k • written 2 days ago by
sarumonsus
• 0
0
votes
0
replies
113
views
How to implement an IGV to streamlit app?
python
streamlit
igv
2 days ago by
avigail.shnaider
• 0
0
votes
0
replies
125
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
3 days ago by
KHURRAM SHAHZAD
• 0
0
votes
0
replies
113
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
3 days ago by
Christopher
• 0
0
votes
0
replies
116
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
3 days ago by
DGTool
• 0
0
votes
1
reply
184
views
Problem with Seurat package in PercentageFeatureSet function
cell
single
updated 2 days ago by
bk11
★ 2.4k • written 3 days ago by
Yoosef
▴ 60
0
votes
1
reply
258
views
creating batch colum for batch correction
batch-correction
combat
2 days ago by
Expert
▴ 10
0
votes
1
reply
213
views
Help with DGEList function
DGEList
R
updated 3 days ago by
marco.barr
▴ 90 • written 4 days ago by
Natali
• 0
0
votes
0
replies
153
views
Homer motif analysis
Homer
4 days ago by
daffodil
▴ 10
0
votes
1
reply
201
views
fastq screen aligner no specified.
BWA
Bowtie2
FastqScreen
updated 4 days ago by
GenoMax
142k • written 5 days ago by
Ximena
• 0
0
votes
1
reply
196
views
filtering before dada2
bbduk
qiime2
dada2
metagenomic
updated 4 days ago by
Ram
43k • written 5 days ago by
Valentina
• 0
442 results • Page
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Difference between Pysam Pileup and Fetch
Answer: Where can I download some example BAM files?
Comment: Where can I download some example BAM files?
Where can I download some example BAM files?
Verify if all the components of a pathway are present in a genomes
removeBatchEffect explained using base R linear models
How to get number of characters (nucleotides) in fasta file
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Answer: Contig assembly task, errors
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Philipp Bayer
8.4k
Feels a bit strange for an aptitude test, feels more like homework. 1) seems OK to me, just chuck them into CAP3 and see what falls out.…
Comment: Help with Biopython for Beginner
by
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161k
> Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the c…
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bcftools view -G in.vcf.gz <!-- Diabetic foot ulceration (DFU) is a devastating complication of diabetes whose pathogenesis rema…
Comment: Filtering Multi-sample VCF file for all except one Genotype
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I probably got some of the vocabulary wrong. I thought that "Dom HOR2932 HOR3036 HOR3726 KWSBambina Rec S42IL_124" were representing my ge…
Comment: featureCounts output assigned value higher than and HISAT2 mapping.
by
Ram
43k
It's featureCount**s**, not featureCount. I've edited your post and fixed all mentions of featureCounts.
Comment: kinannote software installation problems
by
Emanoelle
• 0
Hey, I know it's been 5 years but I have the same issue. When I run the test the software is unable to perform and always deliver the follo…
Comment: STAR aligner error
by
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43k
If they can't help you, we probably can't do much either. But we can optimize your STAR command. BAM SortedByCoordinate is the worst settin…
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Hi, you can check it from github here: [https://zwdzwd.github.io/InfiniumAnnotation][1]. I don't know if this is what you are looking fo…
Comment: RNA seq analysis
by
ATpoint
82k
It makes absolutely no sense to conduct such an analysis. I strongly discourage you to even start with it. Results will be utterly nonsense…
Comment: Differentail gene expression results
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swbarnes2
14k
Cross-posted: https://support.bioconductor.org/p/9158194/
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It will depend on your context and question. I guess you will want to compare gene expression between your conditions within cell types …
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You get this error when you try to compare two data frames that have different dimensions. Try using the traceback() command to figure out …
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Sorry, this was supposed to be a comment appended to the chain above. I didn't mean to post as an answer.
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> when I looked at the expression of aging marker genes, I noticed that diets sequenced in the same batch appeared more similar. How simil…
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▴ 90
Curious if others have also benefited from Picard's [CompareSAMs][1] tool. Seems to do exactly what Madhu has requested. If the headers …
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