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24 results • Page
1 of 1
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
14
views
Enhanced Volcano-Cut off
enhanced
foldchange
volcano
1 hour ago by
odi
▴ 10
0
votes
1
reply
22
views
Help with Biopython for Beginner
Python
FASTA
Biopython
ORF
Beginner
updated 20 minutes ago by
Pierre Lindenbaum
161k • written 1 hour ago by
cput
• 0
0
votes
0
replies
20
views
Annotate VCF via VEP for gnomAD annotation considering FILTER column
vep
vcf
gnomad
2 hours ago by
asalimih
▴ 60
0
votes
4
replies
259
views
Filtering Multi-sample VCF file for all except one Genotype
variant
SNP
VCF
3 hours ago by
schmince
• 0
0
votes
1
reply
68
views
featureCounts output summary assigned value higher than uniquely mapped reads from HISAT2
RNA-seq
featureCounts
HISAT
2 hours ago by
Prawesh
• 0
0
votes
9
replies
1.4k
views
kinannote software installation problems
kinannote
updated 4 hours ago by
Emanoelle
• 0 • written 5.7 years ago by
Elizabeth
▴ 30
0
votes
0
replies
32
views
Pathway analysis of Bacteria from denovo genome assembly
KEGG-KASS
WGS
Pathway
denovo
updated 3 hours ago by
Ram
43k • written 6 hours ago by
mathavanbioinfo
▴ 90
3
votes
4
replies
3.9k
views
FarmCPU - how to explain the reported 'effect'?
gwas
updated 11 hours ago by
chloek88
• 0 • written 5.5 years ago by
Philipp Bayer
8.4k
0
votes
3
replies
170
views
RNA seq analysis
DESeq
RNA-seq
updated 4 hours ago by
Ram
43k • written 12 hours ago by
prifa
• 0
0
votes
0
replies
86
views
Chance for trained without experience
bio
updated 12 hours ago by
ATpoint
82k • written 13 hours ago by
shehab
• 0
0
votes
0
replies
63
views
Xenium multi sample data
batch
annotation
cell
Xenium
effect
14 hours ago by
Omics data mining
▴ 260
0
votes
2
replies
119
views
Phasing a mixture of two individuals' DNA with long reads
long-reads
phasing
12 hours ago by
njornet
▴ 20
0
votes
2
replies
136
views
Exploring Diet Effects in Single-Cell RNA Sequencing
batch_effect
scRNA
seurat
integration
updated 7 hours ago by
Adam
▴ 30 • written 15 hours ago by
Darya
• 0
0
votes
5
replies
183
views
Percentage coverage of reference genome by de novo genome
SAMtools
BWA
alignment
ddRAD
updated 11 hours ago by
Joe
21k • written 15 hours ago by
Lemonhope
• 0
0
votes
0
replies
81
views
Why does my Hi-C contact map show large regions making little to no contact?
BWA-MEM2
Hi-C
PretextMap
15 hours ago by
Winter
• 0
0
votes
0
replies
56
views
Generating .bed file and .map file for polyploid vcf file through plink
bed
polyploid
map
plink
18 hours ago by
analyst
▴ 50
0
votes
0
replies
68
views
meffil.snp.concordance
meffil
methylation
snp_concordance
22 hours ago by
kyj222637
• 0
0
votes
1
reply
106
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
updated 9 hours ago by
Bastien Hervé
5.3k • written 23 hours ago by
sooni
▴ 20
0
votes
3
replies
171
views
STAR aligner error
RNA-seq
STAR
slurm
updated 4 hours ago by
Ram
43k • written 1 day ago by
M.
▴ 30
0
votes
2
replies
161
views
Correlating Bulk Differential Expression with quantitative
Differential-Expression
DESeq2
8 hours ago by
Nicholas
• 0
5
votes
5
replies
248
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
20 hours ago by
Chris
▴ 280
0
votes
2
replies
159
views
Differentail gene expression results
differential
expression
gene
rna-seq
Deseq2
updated 6 hours ago by
swbarnes2
14k • written 1 day ago by
ahmad.sajad4541
• 0
0
votes
1
reply
126
views
Correlation Analysis
statistics
methylation
NGS
expression
updated 13 hours ago by
manaswwm
▴ 510 • written 1 day ago by
Researcher
▴ 30
1
vote
7
replies
466
views
Question regarding WGCNA
WGCNA
Network-construction
updated 4 hours ago by
Ram
43k • written 5 days ago by
deepak
• 0
24 results • Page
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Recent Votes
Answer: Where can I download some example BAM files?
Comment: Where can I download some example BAM files?
Where can I download some example BAM files?
Verify if all the components of a pathway are present in a genomes
removeBatchEffect explained using base R linear models
How to get number of characters (nucleotides) in fasta file
Answer: How can I analyze normalized expression data?
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Popular Question
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rackbersingh
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DKA
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Centurion
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mathavanbioinfo
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Recent Replies
Comment: Help with Biopython for Beginner
by
Pierre Lindenbaum
161k
> Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the c…
Answer: bcftools - reducing to "sites-only"?
by
Pierre Lindenbaum
161k
bcftools view -G in.vcf.gz <!-- Diabetic foot ulceration (DFU) is a devastating complication of diabetes whose pathogenesis rema…
Comment: Filtering Multi-sample VCF file for all except one Genotype
by
schmince
• 0
I probably got some of the vocabulary wrong. I thought that "Dom HOR2932 HOR3036 HOR3726 KWSBambina Rec S42IL_124" were representing my ge…
Comment: featureCounts output assigned value higher than and HISAT2 mapping.
by
Ram
43k
It's featureCount**s**, not featureCount. I've edited your post and fixed all mentions of featureCounts.
Comment: kinannote software installation problems
by
Emanoelle
• 0
Hey, I know it's been 5 years but I have the same issue. When I run the test the software is unable to perform and always deliver the follo…
Comment: STAR aligner error
by
Ram
43k
If they can't help you, we probably can't do much either. But we can optimize your STAR command. BAM SortedByCoordinate is the worst settin…
Answer: Obtaining Infinium Methylation450K manifest for hg38
by
marco.barr
▴ 90
Hi, you can check it from github here: [https://zwdzwd.github.io/InfiniumAnnotation][1]. I don't know if this is what you are looking fo…
Comment: RNA seq analysis
by
ATpoint
82k
It makes absolutely no sense to conduct such an analysis. I strongly discourage you to even start with it. Results will be utterly nonsense…
Comment: Differentail gene expression results
by
swbarnes2
14k
Cross-posted: https://support.bioconductor.org/p/9158194/
Answer: Seurat V5 integration
by
Bastien Hervé
5.3k
It will depend on your context and question. I guess you will want to compare gene expression between your conditions within cell types …
Answer: Error in plotting PCA plot in seurat
by
Adam
▴ 30
You get this error when you try to compare two data frames that have different dimensions. Try using the traceback() command to figure out …
Comment: Applying the metacell2 algorithm using python
by
Wayne
★ 2.0k
Sorry, this was supposed to be a comment appended to the chain above. I didn't mean to post as an answer.
Comment: Exploring Diet Effects in Single-Cell RNA Sequencing
by
Adam
▴ 30
> when I looked at the expression of aging marker genes, I noticed that diets sequenced in the same batch appeared more similar. How simil…
Answer: How to compare compare two Sam files to check mapping
by
DavidStreid
▴ 90
Curious if others have also benefited from Picard's [CompareSAMs][1] tool. Seems to do exactly what Madhu has requested. If the headers …
Answer: How/where can I get fungal mitogenome data for analysis?
by
alex.zaccaron
▴ 410
The best repository is probably NCBI Organelle Resources. You can search by taxonomy and download their mt genomes. Check it out for fungi…
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