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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000genomes PLINK PCA
updated 3 months ago by • 0 • written 6.6 years ago by 89k
13
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9
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8.0k
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6 follow
Tutorial: STARsolo config for 10x Chromium v1, v2, v3
Chromium 10x STARsolo STAR
updated 6 months ago by 150k • written 4.5 years ago by 89k
0
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0
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452
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Answer: Answer: Met 500 data
7 months ago by Kevin Blighe 89k
0
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0
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802
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Comment: Comment: How to View Peaks from ChIP-seq Data generated using old reference genome (hg18)
7 months ago by Kevin Blighe 89k
0
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0
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2.6k
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Comment: Comment: Current best practive to liftOver many SNVs from hg19 to GRCh38
7 months ago by Kevin Blighe 89k
0
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0
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637
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Answer: Answer: 3 samples (control) vs 3 samples (condition) 100M coverage data
7 months ago by Kevin Blighe 89k
0
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0
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734
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Answer: Answer: Explaining my heatmap for PC1 and my PC2 with gene list
7 months ago by Kevin Blighe 89k
1
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0
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699
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Answer: Answer: How to deal with warnings from PLINK while performing QC using HAPMAP data ?
7 months ago by Kevin Blighe 89k
0
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0
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627
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Answer: Answer: GWAS on traits non-normally distributed
7 months ago by Kevin Blighe 89k
0
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0
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2.2k
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Answer: Answer: DEseq2 on expected counts
7 months ago by Kevin Blighe 89k
0
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0
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553
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Answer: Answer: VCF files
7 months ago by Kevin Blighe 89k
1
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0
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436
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Answer: Answer: Values of relatedness matrix exceed 0 and 1
7 months ago by Kevin Blighe 89k
0
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1
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1.0k
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Answer: Answer: rna-seq heatmap z-score calculation - TPM?
7 months ago by Kevin Blighe 89k
0
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1
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2.6k
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Comment: Comment: Current best practive to liftOver many SNVs from hg19 to GRCh38
7 months ago by Kevin Blighe 89k
0
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1
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1.0k
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Comment: Comment: PLINK error doing a GWAS
7 months ago by Kevin Blighe 89k
0
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1
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987
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Answer: Answer: Analyzing PCA Clustering from PLINK Output
7 months ago by Kevin Blighe 89k
0
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2
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2.6k
views
Answer: Answer: Current best practive to liftOver many SNVs from hg19 to GRCh38
7 months ago by Kevin Blighe 89k
1
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1
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999
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Answer: Answer: gene naming
7 months ago by Kevin Blighe 89k
0
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0
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776
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Answer: Answer: Affymetrix microarray
7 months ago by Kevin Blighe 89k
0
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0
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586
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Answer: Answer: Why does 1 variant produce 3 genes as a result?
7 months ago by Kevin Blighe 89k
0
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0
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935
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Answer: Answer: Batch correction in RNAseq
7 months ago by Kevin Blighe 89k
2
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0
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537
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Answer: Answer: WGCNA - dendogram: How to interpret alterations of clusters
7 months ago by Kevin Blighe 89k
0
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0
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636
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Answer: Answer: Batch Effect Correction in RNA-seq Data Using SVA and DESeq2
7 months ago by Kevin Blighe 89k
8
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4
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3.8k
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Tutorial: Automated dbSNP lookup by rsID position, plus genome build liftover
rsid hg19 liftover hg38 dbsnp
updated 7 months ago by • 0 • written 2.6 years ago by 89k
0
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2
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974
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Answer: Answer: Volcano plot with different font size for gene labels
updated 9 months ago by 45k • written 9 months ago by 89k
1
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1
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787
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Comment: Comment: FDA approved Biomarker database access
9 months ago by Kevin Blighe 89k
0
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0
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919
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Comment: Comment: Bulk rna sequencing
9 months ago by Kevin Blighe 89k
0
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0
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919
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Comment: Comment: Bulk rna sequencing
9 months ago by Kevin Blighe 89k
0
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1
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787
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Answer: Answer: FDA approved Biomarker database access
9 months ago by Kevin Blighe 89k
0
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0
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1.6k
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Answer: Answer: Heatmap and rna-seq
11 months ago by Kevin Blighe 89k
0
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0
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23k
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Comment: Comment: Clustering of DAVID gene enrichment results from gene expression studies
11 months ago by Kevin Blighe 89k
76
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72
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23k
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19 follow
Tutorial: Clustering of DAVID gene enrichment results from gene expression studies
enrichment david
11 months ago by Kevin Blighe 89k
1
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1
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652
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Comment: Comment: WGCNA
11 months ago by Kevin Blighe 89k
2
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1
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658
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Answer: Answer: Convert to ENTREZGENE
updated 12 months ago by 45k • written 12 months ago by 89k
10
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6
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5.3k
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Tutorial: CorLevelPlot - Visualise correlation results, e.g., clinical parameter correlations
correlation corlevelplot
updated 12 months ago by 45k • written 7.1 years ago by 89k
2
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1
reply
816
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Answer: Answer: Microarray analysis using Limma
14 months ago by Kevin Blighe 89k
0
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1
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2.8k
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Comment: Comment: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
updated 14 months ago by 45k • written 15 months ago by 89k
0
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0
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1.7k
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Comment: Comment: Deseq2 returned the same p-adj for several genes
updated 14 months ago by 45k • written 15 months ago by 89k
0
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1
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1.7k
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Comment: Comment: Deseq2 returned the same p-adj for several genes
updated 14 months ago by 45k • written 15 months ago by 89k
0
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1
reply
1.7k
views
Comment: Comment: Deseq2 returned the same p-adj for several genes
updated 14 months ago by 45k • written 15 months ago by 89k
4
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1
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1.0k
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Answer: Answer: ICD9 versus ID10 in UK BRAP
15 months ago by Kevin Blighe 89k
1
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1
reply
1.7k
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Comment: Comment: Deseq2 returned the same p-adj for several genes
updated 14 months ago by 45k • written 15 months ago by 89k
1
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1
reply
1.7k
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Answer: Answer: Deseq2 returned the same p-adj for several genes
updated 14 months ago by 45k • written 15 months ago by 89k
0
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1
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1.6k
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Answer: Answer: Define enhancer regions
15 months ago by Kevin Blighe 89k
0
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0
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1.3k
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Comment: Comment: Log2 transformation is well used, but is there a good paper that can be used as
15 months ago by Kevin Blighe 89k
0
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1
reply
632
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Answer: Answer: Ideas to identify unique genes of each brain regions
15 months ago by Kevin Blighe 89k
1
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1
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1.0k
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Answer: Answer: filtering low expressed gene in microarray for WGCNA
15 months ago by Kevin Blighe 89k
1
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2
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1.4k
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Comment: Comment: Quantile normalisation on RNAseq with substantial differences on sample size
15 months ago by Kevin Blighe 89k
0
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1
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1.2k
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Comment: Comment: Can I remove all variants in a vcf file that have 0/0 for PRS calculation?
15 months ago by Kevin Blighe 89k
1
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0
replies
708
views
Answer: Answer: What is the expression value of GSE29609 in GEO database
15 months ago by Kevin Blighe 89k
9,863 results • Page 1 of 198
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