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Comment: Comment: How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental
18 months ago by Kevin Blighe 88k
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2.2k
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Comment: Comment: Obtaining the AF and DP values for variants in a VCF
19 months ago by Kevin Blighe 88k
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1
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4.2k
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Comment: Comment: MAPQ filtering for clinical applications
19 months ago by Kevin Blighe 88k
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4.2k
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Comment: Comment: MAPQ filtering for clinical applications
19 months ago by Kevin Blighe 88k
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MAPQ filtering for clinical applications
MAPQ clinical NGS
updated 19 months ago by ▴ 40 • written 7.3 years ago by 88k
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Comment: Comment: Subsetting DESeq data set to compare treatments within one group (multi-group ex
19 months ago by Kevin Blighe 88k
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581
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Comment: Comment: I am looking for public databases of chest computed tomography reports
20 months ago by Kevin Blighe 88k
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720
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Comment: Comment: colour background on lables from EnhancedVolcano in R
20 months ago by Kevin Blighe 88k
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1.2k
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Comment: Comment: ROC analysis, is this ROC curve usual?
20 months ago by Kevin Blighe 88k
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1.2k
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Comment: Comment: ROC analysis, is this ROC curve usual?
20 months ago by Kevin Blighe 88k
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1.2k
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Comment: Comment: ROC analysis, is this ROC curve usual?
20 months ago by Kevin Blighe 88k
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20k
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Comment: Comment: Is the heterozygosity flag (--het) in vcftools calculate observed and expected h
21 months ago by Kevin Blighe 88k
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1
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6.9k
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Comment: Comment: gene filtering for agilent microarray using Limma
21 months ago by Kevin Blighe 88k
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1.5k
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Comment: Comment: how to merge the DNA_methylation data downloaded for GDC database
21 months ago by Kevin Blighe 88k
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1.7k
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Answer: Answer: How to retrieve Microarray probe annotations
21 months ago by Kevin Blighe 88k
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2.1k
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Comment: Comment: GDCquery error downloading TARGET-AML data
21 months ago by Kevin Blighe 88k
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1
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1.1k
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Comment: Comment: Enrichment analysis based on kegg for zebrafish
22 months ago by Kevin Blighe 88k
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2.5k
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Comment: Comment: What are Differentially Expressed Genes ?!!
22 months ago by Kevin Blighe 88k
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2.8k
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Answer: Answer: Overlay points with EnhancedVolcano R
22 months ago by Kevin Blighe 88k
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991
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Comment: Comment: How can I avoid artifacts in gene set/pathway scoring by UCell and similar algor
22 months ago by Kevin Blighe 88k
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1
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1.3k
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Comment: Comment: Calculation of gene expression 2^-ΔΔCt.
22 months ago by Kevin Blighe 88k
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1
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1.3k
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Answer: Answer: Calculation of gene expression 2^-ΔΔCt.
22 months ago by Kevin Blighe 88k
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3.4k
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Comment: Comment: Automated dbSNP lookup by rsID position, plus genome build liftover
22 months ago by Kevin Blighe 88k
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681
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Answer: Answer: What is read depth exactly?
22 months ago by Kevin Blighe 88k
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572
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Comment: Comment: differential expression analysis
22 months ago by Kevin Blighe 88k
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2.5k
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Answer: Answer: What are Differentially Expressed Genes ?!!
22 months ago by Kevin Blighe 88k
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731
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Answer: Answer: Calculating Log of the odds (LOD)
22 months ago by Kevin Blighe 88k
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936
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Answer: Answer: installation of bioclite gives an error
updated 19 months ago by 44k • written 22 months ago by 88k
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23k
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Comment: Comment: How to extract the list of genes from TCGA CNV data
23 months ago by Kevin Blighe 88k
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733
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Answer: Answer: R install BiocManager
24 months ago by Kevin Blighe 88k
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10.0k
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Comment: Comment: WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonf
2.0 years ago by Kevin Blighe 88k
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1.0k
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Comment: Comment: Is there a way to obtain a list/dataframe of the CorLevelPlot results?
2.1 years ago by Kevin Blighe 88k
2
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1
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1.0k
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Answer: Answer: Is there a way to obtain a list/dataframe of the CorLevelPlot results?
2.1 years ago by Kevin Blighe 88k
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9.8k
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Comment: Comment: Predicting survival of cancer patients using glmnet cox
2.1 years ago by Kevin Blighe 88k
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60
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16 follow
Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
1000genomes PLINK PCA VCF
updated 22 months ago by 44k • written 7.3 years ago by 88k
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Comment: Comment: ENSMUSG number convert to gene name
2.1 years ago by Kevin Blighe 88k
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1.1k
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Comment: Comment: Animation of EnhancedVolcano?
2.1 years ago by Kevin Blighe 88k
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1.5k
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Answer: Answer: How can I convert -log10 (p-value) to p-value?
2.1 years ago by Kevin Blighe 88k
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1.0k
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Answer: Answer: How to deal with "///" in between gene symbols?
2.1 years ago by Kevin Blighe 88k
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883
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Comment: Comment: Retrieve all reviewed proteins from a list of species names
2.1 years ago by Kevin Blighe 88k
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5.3k
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Comment: Comment: Use padj instead of p-value to ploting DE genes using EnhancedVolcano
2.2 years ago by Kevin Blighe 88k
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2.4k
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Answer: Answer: Availability of pre-ensembl information in biomart
2.2 years ago by Kevin Blighe 88k
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1.2k
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Comment: Comment: RNA-Seq Reads Count
2.2 years ago by Kevin Blighe 88k
2
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4.1k
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Answer: Answer: reduce space between X-axis ticks
2.2 years ago by Kevin Blighe 88k
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1
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2.7k
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Comment: Comment: R lags error
2.2 years ago by Kevin Blighe 88k
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1
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646
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Answer: Answer: RNA-seq dataset of experiment and control group of TARGET-ALL project in TCGA po
2.2 years ago by Kevin Blighe 88k
2
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1
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54k
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Comment: Comment: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
2.2 years ago by Kevin Blighe 88k
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1
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54k
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Comment: Comment: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
2.2 years ago by Kevin Blighe 88k
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1.4k
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Comment: Comment: Pattern match using R Biostrings
2.2 years ago by Kevin Blighe 88k
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1
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1.4k
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Comment: Comment: Pattern match using R Biostrings
2.2 years ago by Kevin Blighe 88k
9,863 results • Page 3 of 198
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