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124 results • Page
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Herald:
The Biostar Herald for Monday, April 29, 2024
herald
3 days ago by
Biostar
2.7k
1
vote
1
reply
211
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Herald:
The Biostar Herald for Tuesday, April 23, 2024
herald
updated 9 days ago by
Pierre Lindenbaum
161k • written 9 days ago by
Biostar
2.7k
6
votes
0
replies
201
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Herald:
The Biostar Herald for Monday, April 15, 2024
herald
17 days ago by
Biostar
2.7k
3
votes
0
replies
161
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Herald:
The Biostar Herald for Tuesday, April 09, 2024
herald
23 days ago by
Biostar
2.7k
1
vote
0
replies
174
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Herald:
The Biostar Herald for Wednesday, April 03, 2024
herald
29 days ago by
Biostar
2.7k
3
votes
0
replies
198
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Herald:
The Biostar Herald for Monday, March 25, 2024
herald
5 weeks ago by
Biostar
2.7k
3
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0
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209
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Herald:
The Biostar Herald for Monday, March 11, 2024
herald
7 weeks ago by
Biostar
2.7k
4
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0
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291
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Herald:
The Biostar Herald for Monday, February 26, 2024
herald
9 weeks ago by
Biostar
2.7k
1
vote
0
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229
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Herald:
The Biostar Herald for Tuesday, February 20, 2024
herald
10 weeks ago by
Biostar
2.7k
2
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0
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255
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Herald:
The Biostar Herald for Monday, February 12, 2024
herald
11 weeks ago by
Biostar
2.7k
1
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0
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276
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Herald:
The Biostar Herald for Wednesday, January 31, 2024
herald
3 months ago by
Biostar
2.7k
3
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0
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294
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Herald:
The Biostar Herald for Monday, January 22, 2024
herald
3 months ago by
Biostar
2.7k
1
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0
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276
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Herald:
The Biostar Herald for Monday, January 15, 2024
herald
3 months ago by
Biostar
2.7k
2
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0
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319
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Herald:
The Biostar Herald for Monday, January 08, 2024
herald
3 months ago by
Biostar
2.7k
2
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1
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441
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Herald:
The Biostar Herald for Tuesday, December 19, 2023
herald
updated 4 months ago by
cmdcolin
★ 3.8k • written 4 months ago by
Biostar
2.7k
4
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0
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359
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Herald:
The Biostar Herald for Monday, December 11, 2023
herald
4 months ago by
Biostar
2.7k
2
votes
0
replies
362
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Herald:
The Biostar Herald for Monday, December 04, 2023
herald
5 months ago by
Biostar
2.7k
3
votes
0
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369
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Herald:
The Biostar Herald for Monday, November 27, 2023
herald
5 months ago by
Biostar
2.7k
3
votes
0
replies
404
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Herald:
The Biostar Herald for Monday, November 20, 2023
herald
5 months ago by
Biostar
2.7k
3
votes
0
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388
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Herald:
The Biostar Herald for Monday, November 13, 2023
herald
5 months ago by
Biostar
2.7k
4
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0
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412
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Herald:
The Biostar Herald for Monday, November 06, 2023
herald
5 months ago by
Biostar
2.7k
2
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0
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439
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Herald:
The Biostar Herald for Monday, October 30, 2023
herald
6 months ago by
Biostar
2.7k
2
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0
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483
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Herald:
The Biostar Herald for Monday, October 23, 2023
herald
6 months ago by
Biostar
2.7k
3
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0
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446
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Herald:
The Biostar Herald for Monday, October 16, 2023
herald
6 months ago by
Biostar
2.7k
4
votes
1
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554
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Herald:
The Biostar Herald for Monday, October 09, 2023
herald
written 6 months ago by
Biostar
2.7k
3
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0
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498
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Herald:
The Biostar Herald for Tuesday, September 26, 2023
herald
7 months ago by
Biostar
2.7k
4
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0
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542
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Herald:
The Biostar Herald for Wednesday, September 20, 2023
herald
7 months ago by
Biostar
2.7k
4
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0
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489
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Herald:
The Biostar Herald for Wednesday, September 06, 2023
herald
7 months ago by
Biostar
2.7k
4
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1
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744
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Herald:
The Biostar Herald for Monday, August 28, 2023
herald
updated 8 months ago by
Jesse
▴ 740 • written 8 months ago by
Biostar
2.7k
1
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0
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603
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Herald:
The Biostar Herald for Thursday, August 24, 2023
herald
8 months ago by
Biostar
2.7k
2
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0
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681
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Herald:
The Biostar Herald for Wednesday, August 09, 2023
herald
8 months ago by
Biostar
2.7k
1
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0
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799
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Herald:
The Biostar Herald for Wednesday, August 02, 2023
herald
9 months ago by
Biostar
2.7k
2
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0
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1.1k
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Herald:
The Biostar Herald for Thursday, June 15, 2023
herald
10 months ago by
Biostar
2.7k
2
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0
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771
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Herald:
The Biostar Herald for Monday, June 05, 2023
herald
11 months ago by
Biostar
2.7k
1
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0
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836
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Herald:
The Biostar Herald for Tuesday, May 23, 2023
herald
11 months ago by
Biostar
2.7k
3
votes
0
replies
836
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Herald:
The Biostar Herald for Thursday, May 11, 2023
herald
11 months ago by
Biostar
2.7k
5
votes
1
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828
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Herald:
The Biostar Herald for Monday, May 01, 2023
herald
updated 12 months ago by
cmdcolin
★ 3.8k • written 12 months ago by
Biostar
2.7k
2
votes
0
replies
725
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Herald:
The Biostar Herald for Monday, April 24, 2023
herald
12 months ago by
Biostar
2.7k
1
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0
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712
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Herald:
The Biostar Herald for Monday, April 17, 2023
herald
12 months ago by
Biostar
2.7k
3
votes
0
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748
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Herald:
The Biostar Herald for Monday, April 10, 2023
herald
12 months ago by
Biostar
2.7k
5
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0
replies
650
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Herald:
The Biostar Herald for Monday, April 03, 2023
herald
13 months ago by
Biostar
2.7k
2
votes
0
replies
640
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Herald:
The Biostar Herald for Tuesday, March 28, 2023
herald
13 months ago by
Biostar
2.7k
2
votes
0
replies
704
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Herald:
The Biostar Herald for Monday, March 13, 2023
herald
13 months ago by
Biostar
2.7k
2
votes
0
replies
665
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Herald:
The Biostar Herald for Tuesday, February 28, 2023
herald
14 months ago by
Biostar
2.7k
2
votes
0
replies
689
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Herald:
The Biostar Herald for Monday, February 20, 2023
herald
14 months ago by
Biostar
2.7k
1
vote
0
replies
720
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Herald:
The Biostar Herald for Wednesday, February 15, 2023
herald
14 months ago by
Biostar
2.7k
2
votes
0
replies
702
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Herald:
The Biostar Herald for Monday, February 06, 2023
herald
15 months ago by
Biostar
2.7k
3
votes
0
replies
625
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Herald:
The Biostar Herald for Monday, January 30, 2023
herald
15 months ago by
Biostar
2.7k
1
vote
0
replies
602
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Herald:
The Biostar Herald for Monday, January 23, 2023
herald
15 months ago by
Biostar
2.7k
2
votes
1
reply
793
views
Herald:
The Biostar Herald for Monday, January 16, 2023
herald
updated 15 months ago by
seidel
11k • written 15 months ago by
Biostar
2.7k
124 results • Page
1 of 3
Recent Votes
Answer: Interpreting TCGA .rsem.genes.results and .rsem.genes.normalized_results files.
Interpreting TCGA .rsem.genes.results and .rsem.genes.normalized_results files.
How to convert plink data from 38th assembly to 37
How to convert plink data from 38th assembly to 37
Comment: How to access TCGA samples that were treated with a specific drug?
Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets
Comment: Converting CRAM to FastQ
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Recent Replies
Comment: How to access TCGA samples that were treated with a specific drug?
by
GenoMax
142k
It is possible that these drugs may not have been directly used in TCGA. Authors could have looked for mutations known to be acted on by th…
Comment: Does comparing two different groups to a common third group introduce bias in th
by
Qroid
▴ 40
Are you thinking about a specific scenario? If so, can you provide more info? I think the basic answer is that, yes, your choice of group C…
Answer: Bedtools merge minimum overlap?
by
harold.smith.tarheel
★ 4.9k
Bedtools [intersect][1] allows you to specify the fraction of overlap between two BED (or BAM) files using the F/f/r flags. You could split…
Comment: How to access TCGA samples that were treated with a specific drug?
by
Qroid
▴ 40
Sorry, I should have been more specific. By "that list" I mean what's populated in the Therapeutic Agents tab when no filters are applied. …
Comment: Bedtools merge minimum overlap?
by
bk11
★ 2.4k
Not sure if you wanting to do like this- cat your_input.bed chr1 100 200 region1 + chr1 180 300 regi…
Comment: Extract gRNA sequence using cutadapt
by
GenoMax
142k
If you know what the boundaries of your construct look like then trim the left-end of the read using the tag on that end (`ktrim=l`). Then …
Comment: Extract gRNA sequence using cutadapt
by
gernophil
▴ 80
> Not every read in your data is going to match a guide. That is also true for sure. Let me clarify what I mean. For every read you should…
Answer: VG : No reference-sense paths available in the graph; falling back to generic pa
by
anovak
▴ 120
If your GFA has paths in it that are P lines with names that don't include a sample name, contig name, and separators, then those are what …
Comment: Extract gRNA sequence using cutadapt
by
GenoMax
142k
> if you look at a fastq file you should be able to tell for every read definitely, if it has a perfect match for a guide in it and what gu…
Answer: DiffBind: no peaks in DBA
by
jared.andrews07
★ 16k
Because `dba.analyze` is not meant to be run directly on a peaks file. Have you read the documentation? In addition, a ChIP-seq experiment…
Comment: Converting CRAM to FastQ
by
Maverick
▴ 10
Thank you so much! Will look it up right away.
Comment: Extract gRNA sequence using cutadapt
by
gernophil
▴ 80
> I don't think every guide is supposed to show up in these experiments as far as I have seen. You will get some guides with 0 counts as yo…
Comment: Converting CRAM to FastQ
by
GenoMax
142k
Use `samtools view ` for this conversion. See discussion in https://www.biostars.org/p/9592860/ Specifically @jkbonfield's comment here --…
Comment: How to access TCGA samples that were treated with a specific drug?
by
GenoMax
142k
No that was only from Breast cancer. You could try selecting all data and see if you are able to see all treatments in the set. No idea a…
Comment: Extract gRNA sequence using cutadapt
by
GenoMax
142k
I don't think every guide is supposed to show up in these experiments as far as I have seen. You will get some guides with 0 counts as you …
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