Biostar Herald

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3 days ago by Biostar 2.8k

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updated 23 days ago by Pierre Lindenbaum 161k • written 23 days ago by Biostar 2.8k

4 results • Page 1 of 1

Recent Votes

Comment: How does FindNeighbors() and FindClusters() related and work?

Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i

lncRNA and ncPEPs identification

Answer: Identifying common DEGs among multiple datasets

Answer: ggrepel function: geom_text_repel()

Comment: switch off warning in blast command line

Forward And Reverse Strand Conventions

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Popular Question to Takuma ▴ 20

Recent Replies

Answer: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130

Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…

Comment: Merge clusters in Seurat UMAP by kilcdincer ▴ 10

It did not help either. But I got the answer [here][1] Thank you! [1]: https://github.com/satijalab/seurat/issues/8902

Comment: How to generate table_annovar from VCF input? by Pierre Lindenbaum 161k

there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?

Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0

Thank you very much again. I have learned a lot of things.

Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0

It's a microarryay experiment, not RNASeq

Comment: Sam file Header problem by Pierre Lindenbaum 161k

https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups

Answer: Faster Needleman-Wunsch rapid global alignment of two sequences? by DGTool ▴ 20

I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …

Comment: Faster Needleman-Wunsch rapid global alignment of two sequences? by b.contreras.moreira ▴ 190

Not sure, you might ask in the repo, please share here the response if you find it

Comment: How to generate table_annovar from VCF input? by LucisTheFather • 0

Would you be more specific to your question? Do you mean how to debug this syntax error?

Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0

thank you

Comment: How to extract cells of different species after mapping with combined genome? by Tony • 0

I think this method should be applicable to all high-throughput single-cell RNA-seq platforms. Although the method of determining cell spec…

Comment: BiomartException: Query ERROR for existing dataset in BioMart by Nyksubuz ▴ 10

The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…

Comment: Add line under stat test by Nyksubuz ▴ 10

You could use [this][1] [1]: https://ggplot2.tidyverse.org/reference/geom_segment.html

Comment: API kegg - IndexError: list index out of range by Nyksubuz ▴ 10

It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…

Comment: Sam file Header problem by saifulislam99121 • 0

Thank you for your reply. I am not very much sure about this RG. Can you explain me a bit?

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