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37 results • Page
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Herald:
The Biostar Herald for Monday, May 13, 2024
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Biostar
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The Biostar Herald for Monday, May 06, 2024
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10 days ago by
Biostar
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The Biostar Herald for Monday, April 29, 2024
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17 days ago by
Biostar
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Herald:
The Biostar Herald for Tuesday, April 23, 2024
herald
updated 23 days ago by
Pierre Lindenbaum
161k • written 23 days ago by
Biostar
2.8k
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Herald:
The Biostar Herald for Monday, April 15, 2024
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Biostar
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Herald:
The Biostar Herald for Tuesday, April 09, 2024
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Biostar
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213
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The Biostar Herald for Wednesday, April 03, 2024
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Biostar
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The Biostar Herald for Monday, March 25, 2024
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Biostar
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The Biostar Herald for Monday, March 11, 2024
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The Biostar Herald for Monday, February 26, 2024
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Biostar
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The Biostar Herald for Tuesday, February 20, 2024
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The Biostar Herald for Monday, February 12, 2024
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Biostar
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The Biostar Herald for Wednesday, January 31, 2024
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The Biostar Herald for Monday, January 22, 2024
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The Biostar Herald for Monday, January 15, 2024
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The Biostar Herald for Monday, January 08, 2024
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Biostar
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Herald:
The Biostar Herald for Tuesday, December 19, 2023
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updated 4 months ago by
cmdcolin
★ 3.8k • written 4 months ago by
Biostar
2.8k
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Herald:
The Biostar Herald for Monday, December 11, 2023
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5 months ago by
Biostar
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386
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The Biostar Herald for Monday, December 04, 2023
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389
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The Biostar Herald for Monday, November 27, 2023
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Biostar
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429
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The Biostar Herald for Monday, November 20, 2023
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The Biostar Herald for Monday, November 13, 2023
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The Biostar Herald for Monday, November 06, 2023
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The Biostar Herald for Monday, October 30, 2023
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501
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The Biostar Herald for Monday, October 23, 2023
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464
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The Biostar Herald for Monday, October 16, 2023
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576
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Herald:
The Biostar Herald for Monday, October 09, 2023
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written 7 months ago by
Biostar
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The Biostar Herald for Tuesday, September 26, 2023
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The Biostar Herald for Wednesday, September 20, 2023
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511
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The Biostar Herald for Wednesday, September 06, 2023
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Biostar
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Herald:
The Biostar Herald for Monday, August 28, 2023
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updated 8 months ago by
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▴ 770 • written 8 months ago by
Biostar
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Herald:
The Biostar Herald for Thursday, August 24, 2023
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8 months ago by
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698
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The Biostar Herald for Wednesday, August 09, 2023
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9 months ago by
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The Biostar Herald for Wednesday, August 02, 2023
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9 months ago by
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Herald:
The Biostar Herald for Thursday, June 15, 2023
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11 months ago by
Biostar
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779
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Herald:
The Biostar Herald for Monday, June 05, 2023
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11 months ago by
Biostar
2.8k
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847
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Herald:
The Biostar Herald for Tuesday, May 23, 2023
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11 months ago by
Biostar
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37 results • Page
1 of 1
Recent Votes
Answer: In one PCA plot, can I calculate the percentage of different factors that contri
Answer: In one PCA plot, can I calculate the percentage of different factors that contri
Answer: Details on salmon index
Answer: Generating consensus sequence from bam file
Answer: Short Read Data Genome Assembly
Comment: API kegg - IndexError: list index out of range
Comment: How does FindNeighbors() and FindClusters() related and work?
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Recent Awards •
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ashkan
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Umer
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zx8754
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Recent Replies
Comment: zero TPM for many gene including housekeeping when using kallisto
by
ashkan
▴ 160
@atpoint the question is updated. the first command shows how the index is built.
Comment: Help! Reconstruction of locus, order contigs
by
dthorbur
★ 2.0k
Is the *de novo* annotation required for each contig? Reconstructing homologous regions in many genomes can be tricky regardless, but is es…
Comment: In one PCA plot, can I calculate the percentage of different factors that contri
by
diqixiaoyaoer
▴ 20
You can have a look on my answer. I have post it below.
Answer: In one PCA plot, can I calculate the percentage of different factors that contri
by
diqixiaoyaoer
▴ 20
Here is my script that can be used to calculate how much degree that different factors contribute to PCA variance (PC1 and PC2). # …
Comment: Details on salmon index
by
Lorenzo
• 0
Thank you so much for the beautiful explanation. Just one more curiosity. So in the first versions Salmon utilized RapMap to index and then…
Comment: What marks a De-Novo Genome assembly as FAILED?
by
dthorbur
★ 2.0k
I'm a little confused about your experimental design. Are you making 45 different assemblies? Or are all the samples from the same individu…
Comment: zero TPM for many gene including housekeeping when using kallisto
by
ATpoint
82k
You should be stating how you constructed the index, and include the actual lines for the problematic genes from the abundance files. Note …
Comment: zero TPM for many gene including housekeeping when using kallisto
by
dariober
14k
You could try [salmon](https://combine-lab.github.io/salmon/getting_started/) to see if the problem is with kallisto or with the pseudo-ali…
Comment: solution-Transcriptome.cpp:18:Transcriptome: exiting because of *INPUT FILE* err
by
GenoMax
142k
> INPUT FILE error: could not open input file /geneInfo.tab Based on the error it appears that the input file you are providing could not …
Answer: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴ 130
Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…
Comment: Merge clusters in Seurat UMAP
by
kilcdincer
▴ 10
It did not help either. But I got the answer [here][1] Thank you! [1]: https://github.com/satijalab/seurat/issues/8902
Comment: How to generate table_annovar from VCF input?
by
Pierre Lindenbaum
161k
there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
egascon
• 0
Thank you very much again. I have learned a lot of things.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
egascon
• 0
It's a microarryay experiment, not RNASeq
Comment: Sam file Header problem
by
Pierre Lindenbaum
161k
https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
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