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News:
Online course: Introduction to Deep Learning
DeepLearning
Python
ConvolutionalNeuralNetwork
MachineLearning
1 hour ago by
carlopecoraro2
★ 2.5k
795
votes
167
replies
143k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 3 months ago by
Biostar
2.7k • written 7.4 years ago by
Istvan Albert
100k
0
votes
0
replies
85
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
1 day ago by
carlopecoraro2
★ 2.5k
1
vote
2
replies
234
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 1 day ago by
Weiwen
• 0 • written 2 days ago by
MICOS
▴ 10
0
votes
0
replies
107
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
3 days ago by
carlopecoraro2
★ 2.5k
1
vote
2
replies
1.1k
views
News:
The GDC Legacy Archive is retiring soon.
genomic-data-commons
tcga
gdc
3 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
138
views
News:
Cellosaurus release 49 is available
cell
biocuration
line
database
news
knowledgebase
5 days ago by
Amos Bairoch
▴ 120
0
votes
0
replies
107
views
News:
Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding
Programming
R
updated 6 days ago by
Ram
43k • written 6 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
169
views
News:
Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy
Python
NumPy
updated 8 days ago by
Ram
43k • written 8 days ago by
Chakri
• 0
0
votes
0
replies
135
views
News:
Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis
Statistics
R
updated 8 days ago by
Ram
43k • written 8 days ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
295
views
News:
FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
8 days ago by
David Langenberger
11k
0
votes
0
replies
122
views
News:
Online course: Genome Annotation
Genome-Assembly
Genome-Annotation
9 days ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
221
views
News:
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy
Generative-AI
scRNA
Machine-Learning
updated 11 days ago by
Ram
43k • written 12 days ago by
Claire Watson
▴ 60
0
votes
0
replies
174
views
News:
Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis
Statistics
R
updated 12 days ago by
Ram
43k • written 13 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
131
views
News:
hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models
GLM
R
updated 13 days ago by
Ram
43k • written 14 days ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
142
views
News:
Interested in Spatial Omics?
Bioconductor
Spatial-Omics
Spatial-Transcriptomics
updated 15 days ago by
Ram
43k • written 15 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
103
views
News:
Online course: DNA methylation
Pacbio
Nanopore
DnaMethylation
Evolution
16 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
147
views
News:
upcoming online statistical courses
Statistics
R
Data-Analysis
updated 17 days ago by
Ram
43k • written 17 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
213
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 20 days ago by
Ram
43k • written 20 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
195
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 20 days ago by
Ram
43k • written 20 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
193
views
News:
Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop
RNA-seq
nextflow
DNA-seq
updated 22 days ago by
Ram
43k • written 22 days ago by
David Langenberger
11k
0
votes
0
replies
158
views
News:
Deadline Approaching: PETs for Public Health Challenge
privacy
public-health-challenge
updated 23 days ago by
Ram
43k • written 23 days ago by
polarise
▴ 380
0
votes
0
replies
192
views
News:
Online course: Network Analysis in R
NetworkAnalyis
R
24 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
197
views
News:
Online course: Meta-analysis in R
Meta-Analysis
R
updated 26 days ago by
Ram
43k • written 27 days ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
142
views
News:
Online Live Course: Introduction to Machine Learning in R
Rstats
TScourses
Rlang
Rproject
updated 27 days ago by
Ram
43k • written 27 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
136
views
News:
Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM
Rlang
Rstats
Rproject
updated 27 days ago by
Ram
43k • written 27 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
136
views
News:
Online Course Introduction to Network Analysis and Modelling
Python
Network-Analysis
updated 27 days ago by
Ram
43k • written 27 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
125
views
News:
Course Functional Programming with R
Rstats
TScourses
Rproject
KeepLearning
Rlang
28 days ago by
Transmitting Science communication
▴ 70
12
votes
2
replies
486
views
News:
8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop
RNA-Seq
DNA-Seq
Illumina
28 days ago by
David Langenberger
11k
2
votes
0
replies
133
views
News:
Online course: Genome Annotation
Genome-Assembly
RNA-seq
Genome-Annotation
updated 28 days ago by
Ram
43k • written 28 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
132
views
News:
Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics
vegan
R
updated 4 weeks ago by
Ram
43k • written 4 weeks ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
190
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
6 days ago by
carlopecoraro2
★ 2.5k
8
votes
2
replies
821
views
News:
FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell
sequencing
4 weeks ago by
David Langenberger
11k
0
votes
0
replies
158
views
News:
Online course: Food Traceability Using Genomic Tools
Nanopore
Genomic-Tools
Illumina
Food-Traceability
updated 4 weeks ago by
Ram
43k • written 5 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
159
views
News:
Online course: Eukaryotic Metabarcoding
Metabarcoding
Biodiversity
R
eDNA
5 weeks ago by
carlopecoraro2
★ 2.5k
3
votes
2
replies
615
views
News:
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling
endocrinology
ML
systems-biology
machine-learning
5 weeks ago by
Johannes W. Dietrich
• 0
0
votes
0
replies
221
views
News:
Online course: Reproducibility in Bioinformatics
Singularity
Version-Control
Docker
Containers
updated 5 weeks ago by
Ram
43k • written 5 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
185
views
News:
Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic
Bacterial-Genomics
Pangenomics
updated 5 weeks ago by
Ram
43k • written 5 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
178
views
News:
Online course: Introduction to GWAS
GWAS
Imputation
StatisticalPower
6 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
171
views
News:
Online course: Adaptation Genomics
StructuralVariants
Selection
AdaptationGenomics
PopulationStructure
7 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
164
views
News:
Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics
Pangenomics
7 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
243
views
News:
Online course on Genome Assembly and Annotation (1 seat left)
Galaxy
GenomeAssembly
GenomeAnnotation
7 weeks ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
182
views
News:
NCBI's ClinVar now accepting somatic variation data
variation
NCBI
somatic-variants
ClinVar
7 weeks ago by
PeterC_NCBI
▴ 410
1
vote
1
reply
284
views
News:
EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 7 weeks ago by
dr.eldeib89
• 0 • written 3 months ago by
EMBL Events
▴ 10
1
vote
0
replies
212
views
News:
Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow
pipeline
workshop
8 weeks ago by
David Langenberger
11k
0
votes
0
replies
163
views
News:
Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly
Galaxy
Genome-Annotation
updated 8 weeks ago by
Ram
43k • written 8 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
168
views
News:
Call for abstract: Quest for Orthologs meeting in Montreal
conference
phylogeny
comparativegenomics
orthology
evolution
8 weeks ago by
sina.majidian
▴ 20
1
vote
0
replies
169
views
News:
shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability
terminal
bash
9 weeks ago by
David Langenberger
11k
1
vote
1
reply
214
views
News:
Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser
IGB
updated 9 weeks ago by
Ram
43k • written 9 weeks ago by
IGB Helper
• 0
0
votes
0
replies
200
views
News:
Online course: Network Analysis in Systems Biology with R/Bioconductor
R
RNA-seq
Network-Analysis
Bioconductor
Systems-Biology
updated 9 weeks ago by
Ram
43k • written 9 weeks ago by
carlopecoraro2
★ 2.5k
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Comment: RNA seq analysis
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It makes absolutely no sense to conduct such an analysis. I strongly discourage you to even start with it. Results will be utterly nonsense…
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Cross-posted: https://support.bioconductor.org/p/9158194/
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It will depend on your context and question. I guess you will want to compare gene expression between your conditions within cell types …
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You get this error when you try to compare two data frames that have different dimensions. Try using the traceback() command to figure out …
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Sorry, this was supposed to be a comment appended to the chain above. I didn't mean to post as an answer.
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> when I looked at the expression of aging marker genes, I noticed that diets sequenced in the same batch appeared more similar. How simil…
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Curious if others have also benefited from Picard's [CompareSAMs][1] tool. Seems to do exactly what Madhu has requested. If the headers …
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The best repository is probably NCBI Organelle Resources. You can search by taxonomy and download their mt genomes. Check it out for fungi…
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Good place to start looking: https://www.ncbi.nlm.nih.gov/genome/organelle/ Mitochondrial genomes may also be included in full genomes so …
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Thank you! I will give it a shot
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This has been issued a dozen times before. Have a look at Limma package. https://support.bioconductor.org/p/126817/ https://support.bioco…
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Without your code, it is impossible to make any statement. Please provide the code generating that issue. By googling, here is a [similar …
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Hi, thanks for your information. I am a bit confused now. Does this mean the cram file already contained reference genome information? I in…
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> None of the requested assays are present in the object Does the assay `originalexp` exist in your object `seurat_from_cds` ?
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by
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Thank for the reply. I am running this code: # set a set of soft-thresholding powers powers = c(c(1:20), seq(from = 22, to=30, by=2)) # Ca…
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