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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 3 months ago by 2.7k • written 7.4 years ago by 100k
0
votes
0
replies
74
views
News: Online course. -Time series analysis and Forecasting in R
Time-Series Forecasting R Stastics
20 hours ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
223
views
News: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering Spatial-transcriptomics
updated 1 day ago by • 0 • written 2 days ago by ▴ 10
0
votes
0
replies
106
views
News: Online course: Bioinformatic analysis of transposable elements
GenomeAssembly Transcriptomics TransposableElements ManualCuration
2 days ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
1.1k
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
3 days ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
137
views
News: Cellosaurus release 49 is available
cell biocuration line database news knowledgebase
5 days ago by Amos Bairoch ▴ 120
0
votes
0
replies
106
views
News: Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding Programming R
updated 5 days ago by 43k • written 6 days ago by ★ 2.5k
0
votes
0
replies
169
views
News: Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy Python NumPy
updated 7 days ago by 43k • written 7 days ago by • 0
0
votes
0
replies
134
views
News: Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis Statistics R
updated 7 days ago by 43k • written 8 days ago by ★ 2.5k
0
votes
1
reply
293
views
News: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq variant-calling RNA-seq illumina transcriptomics
8 days ago by David Langenberger 11k
0
votes
0
replies
120
views
News: Online course: Genome Annotation
Genome-Assembly Genome-Annotation
9 days ago by carlopecoraro2 ★ 2.5k
3
votes
0
replies
220
views
News: Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy Generative-AI scRNA Machine-Learning
updated 11 days ago by 43k • written 12 days ago by ▴ 60
0
votes
0
replies
172
views
News: Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis Statistics R
updated 12 days ago by 43k • written 12 days ago by ★ 2.5k
0
votes
0
replies
131
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 13 days ago by 43k • written 14 days ago by ★ 2.5k
3
votes
0
replies
141
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 14 days ago by 43k • written 14 days ago by ★ 2.5k
0
votes
0
replies
102
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
16 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
146
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 16 days ago by 43k • written 17 days ago by ★ 2.5k
0
votes
0
replies
213
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 19 days ago by 43k • written 19 days ago by ★ 2.5k
0
votes
0
replies
195
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 19 days ago by 43k • written 20 days ago by ★ 2.5k
0
votes
0
replies
193
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 21 days ago by 43k • written 21 days ago by 11k
0
votes
0
replies
158
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 22 days ago by 43k • written 22 days ago by ▴ 380
0
votes
0
replies
192
views
News: Online course: Network Analysis in R
NetworkAnalyis R
24 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
197
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 26 days ago by 43k • written 26 days ago by ★ 2.5k
1
vote
0
replies
142
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 26 days ago by 43k • written 27 days ago by ▴ 70
2
votes
0
replies
136
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 26 days ago by 43k • written 27 days ago by ▴ 70
2
votes
0
replies
135
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 26 days ago by 43k • written 27 days ago by ▴ 70
2
votes
0
replies
125
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
27 days ago by Transmitting Science communication ▴ 70
12
votes
2
replies
485
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
28 days ago by David Langenberger 11k
2
votes
0
replies
133
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 28 days ago by 43k • written 28 days ago by ★ 2.5k
0
votes
0
replies
132
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 29 days ago by 43k • written 4 weeks ago by ★ 2.5k
1
vote
0
replies
190
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
6 days ago by carlopecoraro2 ★ 2.5k
8
votes
2
replies
821
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
4 weeks ago by David Langenberger 11k
0
votes
0
replies
158
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 4 weeks ago by 43k • written 4 weeks ago by ★ 2.5k
0
votes
0
replies
159
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
5 weeks ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
615
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
5 weeks ago by Johannes W. Dietrich • 0
0
votes
0
replies
221
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
185
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
178
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
6 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
171
views
News: Online course: Adaptation Genomics
StructuralVariants Selection AdaptationGenomics PopulationStructure
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
163
views
News: Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics Pangenomics
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
242
views
News: Online course on Genome Assembly and Annotation (1 seat left)
Galaxy GenomeAssembly GenomeAnnotation
7 weeks ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
182
views
News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
7 weeks ago by PeterC_NCBI ▴ 410
1
vote
1
reply
284
views
News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 7 weeks ago by • 0 • written 3 months ago by ▴ 10
1
vote
0
replies
211
views
News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
8 weeks ago by David Langenberger 11k
0
votes
0
replies
163
views
News: Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly Galaxy Genome-Annotation
updated 8 weeks ago by 43k • written 8 weeks ago by ★ 2.5k
0
votes
0
replies
167
views
News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
8 weeks ago by sina.majidian ▴ 20
1
vote
0
replies
168
views
News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
9 weeks ago by David Langenberger 11k
1
vote
1
reply
212
views
News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 9 weeks ago by 43k • written 9 weeks ago by • 0
0
votes
0
replies
200
views
News: Online course: Network Analysis in Systems Biology with R/Bioconductor
R RNA-seq Network-Analysis Bioconductor Systems-Biology
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
0
votes
0
replies
230
views
News: The 2024 Canadian Bioinformatics Workshops are here!
CBW workshop training
9 weeks ago by bioinformatics.ca • 0
907 results • Page 1 of 19
Recent Votes
Answer: TFs and Gene databases
Answer: java out of memory error through beagle for imutation
A: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
Could you explain the difference between STAR, KALLISTO, SALMON etc. to experimental Biologist/non-bioinformatician
Comment: Microarray pbrobe ID to gene ID problem
Answer: Microarray pbrobe ID to gene ID problem
Answer: How do I change the title font size in ViolinPlot (Seurat)
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Popular Question to chenl ▴ 10
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Recent Replies
Comment: Soft-clipping read ends based on read group by chenl ▴ 10
Hi, Can you please share how did you clip both ends of the reads with ClipReads? Clipping form the start with `-CT "1-3"` for instance wor…
Comment: Phasing a mixture of two individuals' DNA with long reads by njornet ▴ 20
This is related to that other question but for now, the only thing I'm interested in is separating the three unique chromosomes, without as…
Comment: A question about reference genome for creating the consensus sequence by GenoMax 142k
> I wonder how to adjust the base genome. If you are looking to make changes to the reference you used for alignment then look into http…
Comment: Phasing a mixture of two individuals' DNA with long reads by GenoMax 142k
We had a related discussion in a prior thread by OP: https://www.biostars.org/p/9593780/ Do you have genotype (or independent sequence) da…
Answer: TFs and Gene databases by b.contreras.moreira ▴ 180
I can also suggest <https://footprintdb.eead.csic.es> which links TFs to their DNA motifs, not their gene targets.
Comment: Correlation Analysis by manaswwm ▴ 510
How many methylation and expression values do you have per gene? If per gene you have a table named - *gene_corr*; which has two columns - …
Comment: How do I change the title font size in ViolinPlot (Seurat) by Assa Yeroslaviz ★ 1.8k
thx for the explanation. I did look at the function and I also read in the help page, that you get a patchwork object, only when using `co…
Comment: Percentage coverage of reference genome by de novo genome by Lemonhope • 0
Thank you, I'll check out Quast!
Answer: How do I change the title font size in ViolinPlot (Seurat) by ATpoint 82k
Looking at the source code of the function it seems that they make individual plots with ggplot when `features` is `> 1` and then use patch…
Comment: Percentage coverage of reference genome by de novo genome by Lemonhope • 0
Thank you for the response to answer you question, no, the ddRADseq data (short paired end illumina reads) for all the samples were used …
Comment: Percentage coverage of reference genome by de novo genome by Michael 54k
minimap2 can do this too, mummer (nucmer) is more accurate but slightly slower. If you want to do this as part of generating assembly stati…
Comment: TFs and Gene databases by ijarne • 0
Thank you so much @jaredandrews07 it looks like I will be able to get what I intended with these sources !!
Comment: Percentage coverage of reference genome by de novo genome by Joe 21k
If you have contigs for assemblies, using read-based approaches like samtools is probably not the way to go. As you're interested in % cov…
Comment: Exploring Diet Effects in Single-Cell RNA Sequencing by ATpoint 82k
Has data been generated in the same batch, so same day, in the same 10x runs?
Answer: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C by Michael 54k
So I am assuming you have calculated a Burrows-Wheeler transform, then add the FM-index for the first and last column of the BW-matrix. I r…
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