0
votes
0
replies
14
views
0
votes
0
replies
29
views
0
votes
0
replies
21
views
0
votes
0
replies
31
views
2 hours ago by
Omics data mining
▴
260
0
votes
2
replies
53
views
50 minutes ago by
njornet
▴
20
0
votes
1
reply
61
views
0
votes
4
replies
80
views
0
votes
0
replies
41
views
0
votes
0
replies
43
views
0
votes
0
replies
33
views
0
votes
0
replies
49
views
11 hours ago by
kyj222637
•
0
0
votes
0
replies
48
views
11 hours ago by
sooni
▴
20
0
votes
2
replies
117
views
0
votes
0
replies
52
views
14 hours ago by
synat.keam
▴
100
0
votes
1
reply
100
views
0
votes
3
replies
207
views
0
votes
1
reply
105
views
5
votes
5
replies
224
views
0
votes
1
reply
108
views
updated 23 hours ago by
ATpoint
82k
•
written 1 day ago by
ahmad.sajad4541
•
0
1
vote
5
replies
175
views
updated 21 hours ago by
i.sudbery
19k
•
written 1 day ago by
Assa Yeroslaviz
★
1.8k
1
vote
1
reply
128
views
0
votes
0
replies
82
views
1 day ago by
analyst
▴
50
0
votes
3
replies
143
views
0
votes
1
reply
89
views
updated 1 hour ago by
manaswwm
▴
510
•
written 1 day ago by
Researcher
▴
30
1
vote
2
replies
150
views
0
votes
0
replies
97
views
1 day ago by
Scott McKay
▴
30
0
votes
0
replies
98
views
1 day ago by
piotto
▴
20
0
votes
0
replies
106
views
0
votes
0
replies
92
views
1
vote
6
replies
420
views
updated 21 hours ago by
andres.firrincieli
3.6k
•
written 4 days ago by
deepak
•
0
0
votes
1
reply
178
views
updated 1 day ago by
andres.firrincieli
3.6k
•
written 1 day ago by
Antonio
•
0
0
votes
0
replies
109
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
sidrah.maryam
▴
50
0
votes
0
replies
96
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
arshad1292
▴
100
0
votes
0
replies
107
views
updated 2 days ago by
Pierre Lindenbaum
161k
•
written 2 days ago by
sarumonsus
•
0
0
votes
0
replies
113
views
2 days ago by
avigail.shnaider
•
0
0
votes
0
replies
121
views
0
votes
0
replies
111
views
0
votes
0
replies
114
views
3 days ago by
DGTool
•
0
0
votes
0
replies
122
views
3 days ago by
starswillfade
▴
10
0
votes
1
reply
180
views
0
votes
1
reply
256
views
2 days ago by
Expert
▴
10
0
votes
1
reply
212
views
updated 2 days ago by
marco.barr
▴
90
•
written 4 days ago by
Natali
•
0
0
votes
0
replies
150
views
0
votes
1
reply
197
views
0
votes
1
reply
192
views
0
votes
6
replies
419
views
1
vote
3
replies
279
views
2 days ago by
Lada
▴
30
1
vote
0
replies
145
views
0
votes
0
replies
137
views
4 days ago by
Javier
•
0
Recent Votes
Recent Locations •
All
United Kingdom, just now
Poland, 3 minutes ago
Canada, 3 minutes ago
Danmarks Tekniske Universitet, 4 minutes ago
Mexico, 5 minutes ago
Israel, 6 minutes ago
Italy, 8 minutes ago
Recent Awards •
All
Popular Question to
chenl
▴
10
Popular Question to
User000
▴
690
Popular Question to
ingerslev
•
0
Popular Question to
Tastulek
•
0
Recent Replies
Comment: Soft-clipping read ends based on read group
by
chenl
▴
10
Hi,
Can you please share how did you clip both ends of the reads with ClipReads? Clipping form the start with `-CT "1-3"` for instance wor…
Comment: Phasing a mixture of two individuals' DNA with long reads
by
njornet
▴
20
This is related to that other question but for now, the only thing I'm interested in is separating the three unique chromosomes, without as…
Comment: A question about reference genome for creating the consensus sequence
by
GenoMax
142k
> I wonder how to adjust the base genome.
If you are looking to make changes to the reference you used for alignment then look into http…
Comment: Phasing a mixture of two individuals' DNA with long reads
by
GenoMax
142k
We had a related discussion in a prior thread by OP: https://www.biostars.org/p/9593780/
Do you have genotype (or independent sequence) da…
Answer: TFs and Gene databases
by
b.contreras.moreira
▴
180
I can also suggest <https://footprintdb.eead.csic.es> which links TFs to their DNA motifs, not their gene targets.
Comment: Correlation Analysis
by
manaswwm
▴
510
How many methylation and expression values do you have per gene? If per gene you have a table named - *gene_corr*; which has two columns - …
Comment: How do I change the title font size in ViolinPlot (Seurat)
by
Assa Yeroslaviz
★
1.8k
thx for the explanation.
I did look at the function and I also read in the help page, that you get a patchwork object, only when using `co…
Comment: Percentage coverage of reference genome by de novo genome
by
Lemonhope
•
0
Thank you, I'll check out Quast!
Answer: How do I change the title font size in ViolinPlot (Seurat)
by
ATpoint
82k
Looking at the source code of the function it seems that they make individual plots with ggplot when `features` is `> 1` and then use patch…
Comment: Percentage coverage of reference genome by de novo genome
by
Lemonhope
•
0
Thank you for the response
to answer you question, no, the ddRADseq data (short paired end illumina reads) for all the samples were used …
Comment: Percentage coverage of reference genome by de novo genome
by
Michael
54k
minimap2 can do this too, mummer (nucmer) is more accurate but slightly slower. If you want to do this as part of generating assembly stati…
Comment: TFs and Gene databases
by
ijarne
•
0
Thank you so much @jaredandrews07 it looks like I will be able to get what I intended with these sources !!
Comment: Percentage coverage of reference genome by de novo genome
by
Joe
21k
If you have contigs for assemblies, using read-based approaches like samtools is probably not the way to go.
As you're interested in % cov…
Comment: Exploring Diet Effects in Single-Cell RNA Sequencing
by
ATpoint
82k
Has data been generated in the same batch, so same day, in the same 10x runs?
Answer: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C
by
Michael
54k
So I am assuming you have calculated a Burrows-Wheeler transform, then add the FM-index for the first and last column of the BW-matrix. I r…
Traffic: 2122 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6