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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 3 months ago by 2.7k • written 7.4 years ago by 100k
0
votes
2
replies
370
views
News: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq variant-calling RNA-seq illumina transcriptomics
9 hours ago by David Langenberger 11k
0
votes
0
replies
114
views
News: Online course: An Introduction to Nanopore Direct RNA Sequencing
Nanopore RNAseq
1 day ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
147
views
News: course on Landscape Genomics at the EPFL in Lausanne (June 17-21)
LandscapeGenomics SNPs LocalAdaptation GIS
4 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
118
views
News: Online course: Introduction to Deep Learning
Python Deep-Learning Convolutional-Neural-Network Machine-Learning
updated 5 days ago by 43k • written 5 days ago by ★ 2.5k
0
votes
0
replies
113
views
News: Online course. -Time series analysis and Forecasting in R
Time-Series Forecasting R Stastics
6 days ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
263
views
News: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering Spatial-transcriptomics
updated 6 days ago by • 0 • written 7 days ago by ▴ 10
0
votes
0
replies
116
views
News: Online course: Bioinformatic analysis of transposable elements
GenomeAssembly Transcriptomics TransposableElements ManualCuration
8 days ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
1.2k
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
8 days ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
144
views
News: Cellosaurus release 49 is available
cell biocuration line database news knowledgebase
10 days ago by Amos Bairoch ▴ 120
0
votes
0
replies
112
views
News: Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding Programming R
updated 11 days ago by 43k • written 11 days ago by ★ 2.5k
0
votes
0
replies
178
views
News: Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy Python NumPy
updated 13 days ago by 43k • written 13 days ago by • 0
0
votes
0
replies
138
views
News: Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis Statistics R
updated 13 days ago by 43k • written 13 days ago by ★ 2.5k
0
votes
0
replies
129
views
News: Online course: Genome Annotation
Genome-Assembly Genome-Annotation
14 days ago by carlopecoraro2 ★ 2.5k
3
votes
0
replies
233
views
News: Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy Generative-AI scRNA Machine-Learning
updated 17 days ago by 43k • written 17 days ago by ▴ 60
0
votes
0
replies
182
views
News: Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis Statistics R
updated 18 days ago by 43k • written 18 days ago by ★ 2.5k
0
votes
0
replies
141
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 19 days ago by 43k • written 19 days ago by ★ 2.5k
3
votes
0
replies
148
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 20 days ago by 43k • written 20 days ago by ★ 2.5k
0
votes
0
replies
113
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
21 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
158
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 22 days ago by 43k • written 23 days ago by ★ 2.5k
0
votes
0
replies
220
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 25 days ago by 43k • written 25 days ago by ★ 2.5k
0
votes
0
replies
200
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 25 days ago by 43k • written 25 days ago by ★ 2.5k
0
votes
0
replies
201
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 27 days ago by 43k • written 27 days ago by 11k
0
votes
0
replies
165
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 28 days ago by 43k • written 28 days ago by ▴ 380
0
votes
0
replies
198
views
News: Online course: Network Analysis in R
NetworkAnalyis R
29 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
206
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 4 weeks ago by 43k • written 4 weeks ago by ★ 2.5k
1
vote
0
replies
148
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 4 weeks ago by 43k • written 4 weeks ago by ▴ 70
2
votes
0
replies
145
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 4 weeks ago by 43k • written 4 weeks ago by ▴ 70
2
votes
0
replies
143
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 4 weeks ago by 43k • written 4 weeks ago by ▴ 70
2
votes
0
replies
134
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
4 weeks ago by Transmitting Science communication ▴ 70
12
votes
2
replies
499
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
4 weeks ago by David Langenberger 11k
2
votes
0
replies
142
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 4 weeks ago by 43k • written 4 weeks ago by ★ 2.5k
0
votes
0
replies
138
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
1
vote
0
replies
196
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
11 days ago by carlopecoraro2 ★ 2.5k
8
votes
2
replies
834
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
5 weeks ago by David Langenberger 11k
0
votes
0
replies
169
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
166
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
6 weeks ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
636
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
6 weeks ago by Johannes W. Dietrich • 0
0
votes
0
replies
223
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 2.5k
0
votes
0
replies
188
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 2.5k
0
votes
0
replies
189
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
179
views
News: Online course: Adaptation Genomics
StructuralVariants Selection AdaptationGenomics PopulationStructure
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
171
views
News: Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics Pangenomics
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
251
views
News: Online course on Genome Assembly and Annotation (1 seat left)
Galaxy GenomeAssembly GenomeAnnotation
8 weeks ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
191
views
News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
8 weeks ago by PeterC_NCBI ▴ 410
1
vote
1
reply
289
views
News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 8 weeks ago by • 0 • written 3 months ago by ▴ 10
1
vote
0
replies
219
views
News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
8 weeks ago by David Langenberger 11k
0
votes
0
replies
172
views
News: Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly Galaxy Genome-Annotation
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
0
votes
0
replies
180
views
News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
9 weeks ago by sina.majidian ▴ 20
1
vote
0
replies
176
views
News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
9 weeks ago by David Langenberger 11k
1,000 results • Page 1 of 20
Recent Votes
A: How can I convert -log10 (p-value) to p-value?
Comment: What does the 'E%' represent in BUSCO results?
Answer: What does the 'E%' represent in BUSCO results?
Answer: Combine Two Affymetrix Datasets With Same Platform
Comment: Kraken2 database
Comment: How does gene length effect the number of reads mapped
Comment: How does gene length effect the number of reads mapped
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Recent Replies
Answer: Snakemake wrapper issue by Wei-Chen Pan • 0
Hi, did you solve your problem ? I also encounter same issue but it's `wrapper:"v3.9.0/bio/picard/mergevcfs"`. In my log file, it said:…
Comment: What does the 'E%' represent in BUSCO results? by Philipp Bayer 8.5k
No worries! I found the commit with the maths too: https://gitlab.com/ezlab/busco/-/blame/master/src/busco/busco_tools/hmmer.py?page=2#L135…
Comment: What does the 'E%' represent in BUSCO results? by 林明德 • 0
Thank you for your answer! It really helped me resolve a doubt!
Answer: What does the 'E%' represent in BUSCO results? by Philipp Bayer 8.5k
Ah your edit solved this. 50 BUSCOs contain internal stop codons, indicating they might be erroneous gene models, or the genes themselves a…
Answer: MGLTools does not work in windows 11 by Ashfaq • 0
In my case, I did not see iGPU. There is only one option, Intel UHD Graphics. What I need to do?
Comment: What does the 'E%' represent in BUSCO results? by Philipp Bayer 8.5k
funny enough i tried the same thing (i've used BUSCO heaps times but never saw the E:! even the manual lists 'C:89.0%[S:85.8%,D:3.2%],F:6.9…
Comment: What does the 'E%' represent in BUSCO results? by GenoMax 142k
According to ChatGPT: In BUSCO, the "E" category represents "End" or "Endof" gene fragments. These are orthologous groups for which the ge…
Comment: Help with IGV abbreviation by GeneC • 0
Thank you for the link and details
Comment: Help with IGV abbreviation by GeneC • 0
Thank you very much for helping with the details.
Comment: How does gene length effect the number of reads mapped by Chen • 0
thank you :)
Answer: Filtering based on alternate allelic balance by Arton • 0
I found the answer when using bcftools. Is there is a way to do this with FilterVcf? bcftools filter --include '(FMT/AD[0:1])/(FMT/A…
Comment: Help with IGV abbreviation by GenoMax 142k
Those are SAM format fields. Check section 1.4 here: https://samtools.github.io/hts-specs/SAMv1.pdf > 1:2114:12111:13792 That is part of …
Answer: Help with IGV abbreviation by Mathew ▴ 130
Hi, here is a breakdown of each part that you asked about: **flag 99**: This indicates various properties of the read alignment. In this c…
Comment: Kraken2 database by Mathew ▴ 130
I don't see any databases with just pathogenic bacteria genomes from just a quick search, I would imagine that using the Standard-16 databa…
Comment: Galaxy StringTie error by Mathew ▴ 130
I am not sure if this is true for Galaxy, but when I code in Python, SyntaxWarning: invalid escape sequence '' occurs when you want to add …
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