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24 results • Page
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News:
FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
15 hours ago by
David Langenberger
11k
0
votes
0
replies
116
views
News:
Online course: An Introduction to Nanopore Direct RNA Sequencing
Nanopore
RNAseq
2 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
148
views
News:
course on Landscape Genomics at the EPFL in Lausanne (June 17-21)
LandscapeGenomics
SNPs
LocalAdaptation
GIS
4 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
118
views
News:
Online course: Introduction to Deep Learning
Python
Deep-Learning
Convolutional-Neural-Network
Machine-Learning
updated 5 days ago by
Ram
43k • written 5 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
114
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
6 days ago by
carlopecoraro2
★ 2.5k
1
vote
2
replies
265
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 7 days ago by
Weiwen
• 0 • written 8 days ago by
MICOS
▴ 10
0
votes
0
replies
117
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
8 days ago by
carlopecoraro2
★ 2.5k
1
vote
2
replies
1.2k
views
News:
The GDC Legacy Archive is retiring soon.
genomic-data-commons
tcga
gdc
9 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
144
views
News:
Cellosaurus release 49 is available
cell
biocuration
line
database
news
knowledgebase
11 days ago by
Amos Bairoch
▴ 120
0
votes
0
replies
112
views
News:
Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding
Programming
R
updated 11 days ago by
Ram
43k • written 12 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
178
views
News:
Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy
Python
NumPy
updated 13 days ago by
Ram
43k • written 13 days ago by
Chakri
• 0
0
votes
0
replies
139
views
News:
Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis
Statistics
R
updated 13 days ago by
Ram
43k • written 14 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
131
views
News:
Online course: Genome Annotation
Genome-Assembly
Genome-Annotation
15 days ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
234
views
News:
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy
Generative-AI
scRNA
Machine-Learning
updated 17 days ago by
Ram
43k • written 18 days ago by
Claire Watson
▴ 60
0
votes
0
replies
183
views
News:
Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis
Statistics
R
updated 18 days ago by
Ram
43k • written 18 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
143
views
News:
hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models
GLM
R
updated 19 days ago by
Ram
43k • written 20 days ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
150
views
News:
Interested in Spatial Omics?
Bioconductor
Spatial-Omics
Spatial-Transcriptomics
updated 20 days ago by
Ram
43k • written 20 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
114
views
News:
Online course: DNA methylation
Pacbio
Nanopore
DnaMethylation
Evolution
22 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
159
views
News:
upcoming online statistical courses
Statistics
R
Data-Analysis
updated 22 days ago by
Ram
43k • written 23 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
220
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 25 days ago by
Ram
43k • written 25 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
202
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 25 days ago by
Ram
43k • written 26 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
201
views
News:
Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop
RNA-seq
nextflow
DNA-seq
updated 27 days ago by
Ram
43k • written 27 days ago by
David Langenberger
11k
0
votes
0
replies
167
views
News:
Deadline Approaching: PETs for Public Health Challenge
privacy
public-health-challenge
updated 28 days ago by
Ram
43k • written 28 days ago by
polarise
▴ 380
1
vote
0
replies
197
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
12 days ago by
carlopecoraro2
★ 2.5k
24 results • Page
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Recent Votes
A: How to get read counts on transcript level using featurecounts?
Answer: Vcf file sorting
Answer: How to interpret infinite odds ratio?
Answer: Is there any way to modify this pie chart ?
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
A: How can I convert -log10 (p-value) to p-value?
Comment: What does the 'E%' represent in BUSCO results?
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Recent Replies
Comment: CNVKIT - unable to produce scatter and diagram pdfs
by
Anitha
• 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
Answer: CNVkit for somatic copy number detection
by
Anitha
• 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
Comment: CNVkit for somatic copy number detection
by
Anitha
• 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
Answer: Overlapping Ranges within Granges object
by
ATpoint
82k
There is no one-hit function in GenomicRanges, but you can stick something together using a combination of `findOverlaps` to first find ove…
Comment: Galaxy StringTie error
by
trkfs
• 0
Hi, I did not encounter any " \ - " characters in the fastq input files, and it doesn't seem to be present in any other files either. Thank…
Comment: How to interpret infinite odds ratio?
by
Lukas
• 0
Thanks you for your answer. But according that links interpretation of inf odds ratio is up to hypothesis of the researcher.So my solution …
Answer: How to access GWAVA software of data
by
nonaddldy
▴ 10
Not found in https://ftp.sanger.ac.uk/resources/software/gwava/ ![][1] [1]: /media/images/f69695ec-e047-44f6-95ce-cd4edf1c
Answer: How to access GWAVA software of data
by
nonaddldy
▴ 10
https://www.sanger.ac.uk/tool/gwava/
Comment: Is it necessary to do genotype quality filteration after snp calling with GATK
by
IdaHao0921
• 0
The species I study is not a model species, VQSR can not be applied here. I already used gatk hard-filtering. I mean, after hard-filtering,…
Answer: Overlapping Ranges within Granges object
by
Alex Reynolds
35k
If you're not tied to Granges, you could use `bedmap --fraction-both 0.1` to require at least 10% overlap between reference and map regions…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
by
Vijith
▴ 30
By doing some online search, I tried installing one module `cpan Bio::DB::Fasta` and it is running like a never-ending installation process…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
by
Vijith
▴ 30
I have tried installing AGAT. But it failed the tests. …
Comment: BWA alignment
by
ATpoint
82k
That is not what the logs above tell, but good you solved it.
Answer: Inquiry about deseq2 transformation
by
ATpoint
82k
The transformations first correct for sequencing depth (and [composition][1]) and then apply the variance stabilization / regularization. N…
Answer: The total expressed genes in RNA-Seq data
by
ATpoint
82k
There is no robust definition of "expressed" genes, this has been asked many times before. edgeR doesn't care about "expressed", it cares (…
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