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Limit : this year
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1,000 results • Page
1 of 20
Sort: Rank
Rank
Views
Votes
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0
votes
0
replies
5
views
Gene density plot
density
gene
2 minutes ago by
gubrins
▴ 290
0
votes
2
replies
28
views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex
bwt
just now by
qwertyuiop26
• 0
0
votes
0
replies
59
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
12 hours ago by
Scott McKay
▴ 30
0
votes
0
replies
58
views
Cellphonedb results
cpdb
visulization
cellphonedb
12 hours ago by
piotto
▴ 20
0
votes
1
reply
116
views
Applying the metacell2 algorithm using python
single-cell
scanpy
cells
meta
python
updated 13 hours ago by
Wayne
★ 2.0k • written 15 hours ago by
JACKY
▴ 140
0
votes
0
replies
69
views
Cox Model with interaction item interpretation
Cox
18 hours ago by
Bine
▴ 60
0
votes
0
replies
61
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
18 hours ago by
Javier
• 0
0
votes
4
replies
317
views
Question regarding WGCNA
WGCNA
Network-construction
updated 16 hours ago by
andres.firrincieli
3.6k • written 3 days ago by
deepak
• 0
0
votes
0
replies
69
views
vdjtools
vdjtools
19 hours ago by
yueli7
▴ 250
0
votes
1
reply
114
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome
16S
DESeq2
updated 16 hours ago by
andres.firrincieli
3.6k • written 20 hours ago by
Antonio
• 0
0
votes
0
replies
80
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 21 hours ago by
Ram
43k • written 21 hours ago by
sidrah.maryam
▴ 50
0
votes
0
replies
67
views
Normalizing AMR gene count data
abundance
RGI
updated 21 hours ago by
Ram
43k • written 21 hours ago by
arshad1292
▴ 100
0
votes
0
replies
80
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 1 day ago by
Pierre Lindenbaum
161k • written 1 day ago by
sarumonsus
• 0
0
votes
0
replies
88
views
How to implement an IGV to streamlit app?
python
streamlit
igv
1 day ago by
avigail.shnaider
• 0
0
votes
0
replies
103
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
1 day ago by
KHURRAM SHAHZAD
• 0
0
votes
0
replies
100
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
1 day ago by
Christopher
• 0
0
votes
0
replies
107
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
1 day ago by
DGTool
• 0
0
votes
0
replies
114
views
Seurat V5 integration
Seurat
samples
integration
combine
1 day ago by
starswillfade
▴ 10
0
votes
1
reply
166
views
Problem with Seurat package in PercentageFeatureSet function
cell
single
updated 13 hours ago by
bk11
★ 2.4k • written 2 days ago by
Yoosef
▴ 60
0
votes
1
reply
250
views
creating batch colum for batch correction
batch-correction
combat
23 hours ago by
Expert
▴ 10
0
votes
1
reply
200
views
Help with DGEList function
DGEList
R
updated 1 day ago by
marco.barr
▴ 90 • written 2 days ago by
Natali
• 0
0
votes
0
replies
144
views
Homer motif analysis
Homer
2 days ago by
daffodil
▴ 10
0
votes
3
replies
242
views
HCL database download
database
HCL
human
3 hours ago by
sooni
▴ 20
0
votes
1
reply
195
views
fastq screen aligner no specified.
BWA
Bowtie2
FastqScreen
updated 3 days ago by
GenoMax
142k • written 3 days ago by
Ximena
• 0
0
votes
1
reply
188
views
filtering before dada2
bbduk
qiime2
dada2
metagenomic
updated 3 days ago by
Ram
43k • written 3 days ago by
Valentina
• 0
0
votes
6
replies
403
views
Differential Expression Analysis using DESeq2 in R
deseq2
R
updated 3 days ago by
swbarnes2
14k • written 3 days ago by
Erina
• 0
1
vote
3
replies
273
views
TaxID mapping file
annotation
blobtools
RNAseq
decontamination
transcriptomes
1 day ago by
Lada
▴ 30
1
vote
0
replies
143
views
.lgen file has 3+ different alleles
PLINK
lgen
ped
updated 1 day ago by
zx8754
11k • written 3 days ago by
Emilie
▴ 10
0
votes
0
replies
136
views
vcf procesing for ML antigen prediction
formats
vcf
fastaq
HLA_imputation
HLA_typing
3 days ago by
Javier
• 0
0
votes
1
reply
229
views
Extracting mutation status from MAF files - TCGA
TCGA
maf
mutation
updated 3 days ago by
Thanujay S
• 0 • written 3 days ago by
yahn
• 0
0
votes
0
replies
129
views
IGV interpretation for ATM gene for chromosome 11 for a deceased partient suspected of having melanoma
genetic
Variant
predisposition
3 days ago by
mikemakaveli1
• 0
2
votes
2
replies
211
views
Raw counts using stringtie
stringtie
RNA-seq
updated 3 days ago by
GenoMax
142k • written 3 days ago by
ahmad.sajad4541
• 0
0
votes
0
replies
129
views
Modify plot R mtDNA indel
plot
mtDNA
R
3 days ago by
marco.barr
▴ 90
0
votes
0
replies
270
views
Re-Import modified clusterProfiler's GSEA result from .csv for graphical output-generation (i.e. cnetplot, heatplot)
enrichplot
graphical_output
GSEA
clusterProfiler
3 days ago by
NorbertK
• 0
0
votes
2
replies
242
views
Downloading older version of a tool
Alignment
tools
3 days ago by
Ruqaiya
• 0
0
votes
0
replies
145
views
Generating illumina interops SAV like plots for multiqc reports on HPC
visualization
illumina
ngs
sequencing
3 days ago by
rustykb
▴ 20
3
votes
5
replies
273
views
Generating mpileup file using samtools
mpileup
samtools
updated 3 days ago by
Joe
21k • written 4 days ago by
Ruqaiya
• 0
2
votes
3
replies
278
views
Help with choosing a model species for Augustus for a de novo assembled genome.
augustus
annotation
assembly
genome
updated 3 days ago by
dthorbur
★ 1.9k • written 4 days ago by
Vijith
▴ 30
0
votes
0
replies
145
views
SIngle cell analysis
Seurat
scRNA-seq
Harmony
DoubletFinder
Merge
4 days ago by
Jeyong
• 0
0
votes
0
replies
132
views
Empty table plot using plotGseaTable()
FGSEA
3 days ago by
Chris
▴ 260
3
votes
8
replies
6.6k
views
7 follow
GATK genomicsDBimport intervals for WGS
gatk
genomicsdbimport
updated 4 days ago by
Sd
• 0 • written 5.1 years ago by
Nicolas Rosewick
11k
0
votes
2
replies
195
views
Base Quality Score Recalibration with different reference genome
SNPs
GATK
BQSR
RNA-seq
4 days ago by
dtnondorf
• 0
0
votes
5
replies
379
views
Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA2 - where to go from here?
nf-core
16S
amplicon
dada2
ampliseq
updated 12 hours ago by
Chris Dean
▴ 390 • written 4 days ago by
sovrappensiero
▴ 90
2
votes
8
replies
483
views
How to access TCGA samples that were treated with a specific drug?
TCGA
RNA-seq
14 hours ago by
Qroid
▴ 40
0
votes
1
reply
150
views
Provean help
variant
Provean
updated 4 days ago by
Mensur Dlakic
★ 27k • written 4 days ago by
Arun Sai Kumar
• 0
0
votes
0
replies
100
views
Use of annotation of integrated Seurat object in single sample
Seurat
4 days ago by
Bine
▴ 60
0
votes
1
reply
227
views
Subsetting and merging back Seurat Object brings different results
Seurat
4 days ago by
Bine
▴ 60
1
vote
1
reply
139
views
Discrepancy in read counts from fastq
downsampling
fastq
updated 4 days ago by
Ram
43k • written 5 days ago by
marco.barr
▴ 90
0
votes
0
replies
96
views
Successfully identified and Masked rpeats using RM. What Next?
sequence
annotation
repeatmasker
illumina
assembly
5 days ago by
Vijith
▴ 30
0
votes
0
replies
98
views
Combining Methylation Microarray data from different platforms
Microarray
DNA
EPIC
450K
Methylation
5 days ago by
James
▴ 10
1,000 results • Page
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Recent Votes
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Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C
by
qwertyuiop26
• 0
I'm sorry for any confusion or inconvenience. I'm seeking guidance on which search algorithms are used in the FM-index. I've done extensive…
Comment: Bacterial plasmid analysis
by
nicole.kavanagh
• 0
Hi Daria, I have downloaded pling and the other dependencies as recommended on your github page. I have tried to run the tool a few times …
Answer: Understanding STAR output (Aligned.out.sam file)
by
i.sudbery
19k
The insert size is measured from outermost edge of this read, to the outer most edge of its mate. Like, literally, start_second - start_fir…
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C
by
Michael
54k
So this is your exam question or assignment? Please understand that posting this here is not doing anyone any good. You are supposed to lea…
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82k
I will say that the proper way is the one that confidently identifies your celltypes. > optimal number of marker genes to consider. T…
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by
swbarnes2
14k
When everything is the same size, correcting for size is pointless. It doesn't change the numbers much at all.
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by
swbarnes2
14k
What do the alignments look like in IGV?
Comment: HCL database download
by
sooni
▴ 20
I solved the problem! Thanks!
Comment: Gene Specific coverage from WGS data
by
Adyasha
• 0
Thank you, here I am giving you some example , suppose I have bam files . 1.bam 2.bam 3.bam 4.bam now I want to see Spike gene coverage in …
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Xiaofen
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I'm having a problem and I can't find the button to post, how do you post?
Comment: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
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MICOS
• 0
Contest question details: **To effectively address the accuracy and efficiency issues of clustering algorithms used for spatial transcript…
Comment: HCL database download
by
sooni
▴ 20
I would like to download top markers for each subpopulation data. Is there no way? It seems different from the DGE data.
Comment: Understanding STAR output (Aligned.out.sam file)
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GenoMax
142k
Refer to SAM alignment format: https://samtools.github.io/hts-specs/SAMv1.pdf Check section 1.4.
Answer: Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genom
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3.9k
Step 1: Go to TCGA in the GDC and open the Cohort Builder https://portal.gdc.cancer.gov/analysis_page?app=CohortBuilder&tab=general Step …
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GenoMax
142k
SeqCap kits are discontinued. If you don't find the said file your will need to email Roche Support per this page: https://sequencing.roche…
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