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Answer: Applying the metacell2 algorithm using python
by
Wayne
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I had hoped things like [this Jupyter notebook for the rabbit data analysis](https://nbviewer.org/github/tanaylab/rabembflow/blob/master/2-…
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1769mkc
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please provide the design matrix mean the metadata of the model fit2 which is there in the code . i guess other users can help
Comment: Applying the metacell2 algorithm using python
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The repo does not provide any valuable information unfortunately. The Metacell algorithm they provide in the vignette is missing the metagr…
Comment: Applying the metacell2 algorithm using python
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Wayne
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Yes, they are very clear about this. The page about the Vignettes says:
>"They are not meant as a comprehensive documentation of all the fe…
Comment: Gene density plot
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dthorbur
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This sounds like it would be a simple task in either python or R. Read data in, potentially with a library like `data.table` in `R`, depend…
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Hi, I just solved the same error. In my case, it was because I misunderstood the instructions.
hlahd.sh -t 4
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Ok, then.
You likely have a scale free topology that look like this: [link][1]
In this situation you should pick the power value with an …
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Why did you add this as an answer to a random post? I'm moving this to a comment.
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> I don't understand why SAM header has "Duplicate entry" and what should I do in this case.
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I can't immediately see anything wrong. The log file should contain lines saying how many reads were parsed, how many reads matched the bar…
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Thank you for the explanation. I can see the plots look strange, but i truly don't know why this is. I have a feeling that the sequencing …
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No -- those are ribosomal proteins, not rRNAs.
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Thanks for that link. As noted in that example, you can try `seal.sh` instead of `bbduk.sh`.
> Is it possible, that this pattern is just …
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